Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02149 ATGGACAGGGTGCAGGAGACATATCATTCTGACTTAAATGGTAAGGACTTTGCATATGATGGGGAGAAAAGTCTGTTTACTGTTGGCTCTCTTCCTCAAAACAAGCTTGAGTTTGAAGTTGTTCTTGAGGATGTCACCTCTAACAGGAATAATGGCAATTGCAGCCCTGATGGTAATGGGGACAATGAGGGTGACAGAAAGCGGATGCGACGTCCTTACCGTTCGAAGTCATTCAAAGTAGCGATAAGCTTTGCTGCAAAAATTCCAATGCAGGCCATCGCCAGTGCCTTACGTGGGCAAGAGACAGAGAATTTTCAAGAAGCCATTAGAGTTCTTGATATCATTTTGAGGCAGCATGCTGCTAAGCAAGGCTGCTTACTTGTACGCCAATCTTTTTTCCACAATGATCCAAATAATTTTGCTGATGTAGGAGGTGGTGTCCTAGGCTGTAGAGGATTCCATTCAAGTTTTAGAACTACACAGAGTGGCCTGTCTCTTAACATAGATGTCTCAACTACCATGATAATTACTCCTGGGCCTGTGGTGGATTTCTTAATTTCCAATCAAAATGTGAGAGATCCTTTTCAACTTGACTGGGCTAAGGCCAAAAGGACCCTAAAAAATCTGAGGATTAAAACTAGACCATCCAATCAAGAATTCAAAATTACTGGGCTCAGTGAACTCCCATGCAGAGAGCAAACTTTTACTTTGAAAGGTAAAGGTGGAGGGGATGGTGAAGATGGTAATGAGGAAATCACTGTATATGATTATTTTGTTAATGTTCGTAAGATAGATCTCCGATACTCTTCCGACCTTCCATGTATCAATGTTGGCAAGCCTAAACGGCCAACATTTTTCCCCATTGAGCTTTGTGAATTGGTATCATTGCAACGATATACAAAAGCCCTGTCCACGCTTCAAAGAGCTTCATTAGTGGAGAAGTCCAGGCAGAAGCCACAAGAGAGGATGAAAATTTTGTCTGATGCACTGAGAACTAGCAACTATGGTGCTGAACCTATGCTTCGTAATTGTGGAATTTCTATAAGCACTGGTTTCACTGAAGTGGAGGGTCGGGTCTTGCCTGCACCAAGGTTGAAGTTTGGCAATGGTGAGGATCTCAATCCTAGGAATGGGAGATGGAATGTCAGCAGAGTGAGATTCGTGGAACCGTCAAAGGTAGAAAGATGGGCTGTTGCTAACTTTTCTGCACGCTGTGACGTACGAGGACTTGTACGGGACCTCATTAGAATTGGAGATATGAAAGGAATTAGTATAGAACAACCATTTGATGTGTTTGATGAGAATCCACAGTTTAGGCGTGCCCCACCTATGGTTAGAGTGGAGAAAATGTTTGAAACCATCCAATCTAAACTTCCCGGGGCTCCTCAGTTCCTTCTTTGTTTGCTTCCTGATCGGAAAAATTGTGATATTTATGGACCATGGAAAAAGAAGAATCTTGCTGATTATGGAATCATTAATCAGTGTATGTGTCCTACAAGGGTCAATGATCAGTACCTGACCAATGTTATGTTGAAGATCAATGCCAAGCTTGGTGGATTGAATTCATTGTTAGGTGTTGAACATTCTCCTTCTCTTCCTGTTGTTTCCAAAGCTCCAACCCTCATTCTGGGCATGGATGTGTCACATGGCTCACCTGGGCAGACTGACATTCCTTCAATCGCTGCGGTTGTCAGTTCTAGACACTGGCCTCTGATATCAAAGTATAGGGCATGTGTTCGTACCCAATCTGCGAAGGTTGAAATGATAGATAATTTGTTCAAGCAAGTATCTGAAAAGGAAGATGAAGGCATCATAAGGGAACTTTTGCTTGATTTCTATACAACTTCTGGGAGGAGAAAACCAGAAAATATAATCATATTCAGGGATGGTGTTAGTGAGTCGCAGTTCAATCAAGTTTTGAATATCGAACTTGATCAAATCATTGAGGCTTGCAAATTTCTCGATGAAAATTGGGAGCCAAAATTTGTGGTAATTGTTGCTCAGAAGAACCACCACACCAGATTTTTCCAGCCTGGCTCTCCTGACAATGTCCCACCTGGAACTGTTATCGACAATAAAATTTGTCATCCCAGAAATTATGATTTCTACCTATGTGCACATGCTGGAATGATAGGAACTAGTAGGCCCACCCATTATCATGTGCTGCTTGATGAGGTTGGTTTCTCTCCGGATCAGCTGCAGGAGCTTGTCCATTCCTTATCATATGTGTATCAGAGGAGCACTACTGCCATTTCTGTTGTTGCTCCAATATGCTATGCACACTTGGCTGCCACTCAGTTGGGGCAGTTCATGAAATTTGAGGACAAGTCTGAAACATCTTCAAGCCATGGTGGACTGAGTGGTGCTGGTGCTGTTCCCGTCCCTCAGTTGCCTCCGTTGCAGGAGAATGTCCGCAACACAATGTTCTTTTGTTGA 2436 0.429 MDRVQETYHSDLNGKDFAYDGEKSLFTVGSLPQNKLEFEVVLEDVTSNRNNGNCSPDGNGDNEGDRKRMRRPYRSKSFKVAISFAAKIPMQAIASALRGQETENFQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPNNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIITPGPVVDFLISNQNVRDPFQLDWAKAKRTLKNLRIKTRPSNQEFKITGLSELPCREQTFTLKGKGGGDGEDGNEEITVYDYFVNVRKIDLRYSSDLPCINVGKPKRPTFFPIELCELVSLQRYTKALSTLQRASLVEKSRQKPQERMKILSDALRTSNYGAEPMLRNCGISISTGFTEVEGRVLPAPRLKFGNGEDLNPRNGRWNVSRVRFVEPSKVERWAVANFSARCDVRGLVRDLIRIGDMKGISIEQPFDVFDENPQFRRAPPMVRVEKMFETIQSKLPGAPQFLLCLLPDRKNCDIYGPWKKKNLADYGIINQCMCPTRVNDQYLTNVMLKINAKLGGLNSLLGVEHSPSLPVVSKAPTLILGMDVSHGSPGQTDIPSIAAVVSSRHWPLISKYRACVRTQSAKVEMIDNLFKQVSEKEDEGIIRELLLDFYTTSGRRKPENIIIFRDGVSESQFNQVLNIELDQIIEACKFLDENWEPKFVVIVAQKNHHTRFFQPGSPDNVPPGTVIDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEVGFSPDQLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETSSSHGGLSGAGAVPVPQLPPLQENVRNTMFFC 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02149 811 Pfam N-terminal domain of argonaute 2 116 IPR032474 -
Pumo1g02149 811 Pfam Argonaute linker 2 domain 321 367 IPR032472 -
Pumo1g02149 811 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 5 774 - -
Pumo1g02149 811 SMART DUF1785_2 126 178 IPR014811 -
Pumo1g02149 811 SUPERFAMILY PAZ domain 173 335 IPR036085 GO:0005515
Pumo1g02149 811 Gene3D - 531 811 IPR036397 GO:0003676
Pumo1g02149 811 SUPERFAMILY Ribonuclease H-like 448 770 IPR012337 -
Pumo1g02149 811 Gene3D - 359 525 - -
Pumo1g02149 811 ProSiteProfiles Piwi domain profile. 464 772 IPR003165 GO:0003676
Pumo1g02149 811 Gene3D paz domain 172 299 - -
Pumo1g02149 811 Pfam Mid domain of argonaute 374 427 IPR032473 -
Pumo1g02149 811 Pfam Argonaute linker 1 domain 128 176 IPR014811 -
Pumo1g02149 811 CDD PAZ_argonaute_like 178 294 - -
Pumo1g02149 811 Pfam PAZ domain 182 311 IPR003100 GO:0005515
Pumo1g02149 811 SMART Piwi_a_2 464 772 IPR003165 GO:0003676
Pumo1g02149 811 MobiDBLite consensus disorder prediction 47 70 - -
Pumo1g02149 811 ProSiteProfiles PAZ domain profile. 203 295 IPR003100 GO:0005515
Pumo1g02149 811 CDD Piwi_ago-like 339 766 IPR045246 -
Pumo1g02149 811 FunFam Protein argonaute 3 532 811 - -
Pumo1g02149 811 FunFam Protein argonaute 7 173 299 - -
Pumo1g02149 811 Pfam Piwi domain 465 772 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02149 Pumo-Chr1 49137976 49146735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02149 10 811 Eukaryotic Initiation Factors Gene Family AT5G43810 36.516 4.29e-163 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02149 K11593 - gmx:100820376 1592.02