Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02142 ATGTATGACGTATTTTTTAACTTTAGAGGAGAAGACACACGTAAGACTTTGGTGTCTCATCTCTATGCTGCCCTCCCAAATGTGGGGATCCACACTTTCATCGATGACACGCTTCAAAAGGGAATGGAGTTGGGACCAGAACTAGTGCGAGCAATAAAAGAGTCTCAGATGTCCATAGTCATTTTGTCCAATAACTATGCTTCATCTAGGTGGTGTCTTGATAAGCTGGTCCAAATCATGAAATGTCGTAGAACTTACGCCCAATTTGTTCTGCCCATATTTTATGATGTCGATCCATCGGATATACGTCGTCAAAAGGGTGCTTTTGGAGAACGCTTGGAAGCACTTGCACATAAATGTTTACTACAAGACACGCTCGATCTGTCTGAGAGTTGGAAGAGCTCACTCACAGAGGCTGTAGATTCGATCGATCTATCTAGGAGTTGGAAGAGCGCACTCACAGAGGCTGTAGATTCGATCGATCTATCTAGGAGTTGGAAGAGCGCACTCACAGAGGTTGCAGATTTGATCGGTTGGGATGCGAGGAATTTCAAGACTAAAGGTGACCTGGTGAATGAAATTGTTTGGGACATTTTTAGAAGACTAGACATGTACTTAATGCCCATTACCGTATATCCCGTTGGATTAAAATCACGAGTGCAACAAGTGACTCAGCTTATTGAAGATCAGTTTGCCAGTGGTTGTGTTGTAGGGATATGGGGAATGGGTAGATTAGGTAAAACAACGCTGGCTAAAGCCATTTACAATCATATTTGCAGGAGATTCTTGTATAGAAGTTTCATTGAAAATATTCGAGAAGTTTGGGAAGCAAATAATAGAGGGCATATTGATTTACAAGAACAACTTCTTTCAAATGTCCTAAACACAAAGGTGAAGATACATAGCATTGGGATGGGAACAATTATGATCGACAAAATACTTGCTGGAAAAAGGGCACTCATTGTACTTGATGATGTGAATGAGTTTGACCAATTAAAAGCCCTATGTGGAAATCGTGAATGGATTGGTCAAGAAATTGATTATGTTTATGAGATGGATAGAATGGATGAAAATAAGTCCCTTGAGCTTTTTAGTTGGCATGCTTTTAGAGAAGCAAAACCAAAAGAAGACTTTAATGAACTCACAAGTAATGTGGTTGCTTATTGTGGAGGTCTACCTTTAGCTCTCGAAGTCCTTCGTTCTTATTTAATTGAGAGGACAAAGAAAGAGTGGGAAGATAGAGCCTATGTTACAAAGATACTAAATGGTTGTGGACTAAGTGCTGATATTGGAATACCAGTTCTCATAGAGCGTAGTCTCATAAAAGTTGAAAAGAACAACAAACTGGGAATGCATCATTTGCTACGAGACATGGGAAGAGAGATAATTTGTGAAAGCTCAAGAAACGAACCTGGGAAGCACAGTTGA 1428 0.4006 MYDVFFNFRGEDTRKTLVSHLYAALPNVGIHTFIDDTLQKGMELGPELVRAIKESQMSIVILSNNYASSRWCLDKLVQIMKCRRTYAQFVLPIFYDVDPSDIRRQKGAFGERLEALAHKCLLQDTLDLSESWKSSLTEAVDSIDLSRSWKSALTEAVDSIDLSRSWKSALTEVADLIGWDARNFKTKGDLVNEIVWDIFRRLDMYLMPITVYPVGLKSRVQQVTQLIEDQFASGCVVGIWGMGRLGKTTLAKAIYNHICRRFLYRSFIENIREVWEANNRGHIDLQEQLLSNVLNTKVKIHSIGMGTIMIDKILAGKRALIVLDDVNEFDQLKALCGNREWIGQEIDYVYEMDRMDENKSLELFSWHAFREAKPKEDFNELTSNVVAYCGGLPLALEVLRSYLIERTKKEWEDRAYVTKILNGCGLSADIGIPVLIERSLIKVEKNNKLGMHHLLRDMGREIICESSRNEPGKHS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02142 475 ProSiteProfiles TIR domain profile. 1 202 IPR000157 GO:0007165
Pumo1g02142 475 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 120 IPR035897 -
Pumo1g02142 475 SMART till_3 1 142 IPR000157 GO:0007165
Pumo1g02142 475 PRINTS Disease resistance protein signature 389 403 - -
Pumo1g02142 475 PRINTS Disease resistance protein signature 313 327 - -
Pumo1g02142 475 PRINTS Disease resistance protein signature 236 251 - -
Pumo1g02142 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 413 IPR027417 -
Pumo1g02142 475 Gene3D - 354 421 IPR042197 -
Pumo1g02142 475 Gene3D - 1 203 IPR035897 -
Pumo1g02142 475 Pfam TIR domain 2 198 IPR000157 GO:0007165
Pumo1g02142 475 Gene3D - 204 346 IPR027417 -
Pumo1g02142 475 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 475 IPR044974 GO:0006952
Pumo1g02142 475 Pfam NB-ARC domain 345 413 IPR002182 GO:0043531
Pumo1g02142 475 Pfam NB-ARC domain 222 334 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02142 Pumo-Chr1 48895718 48906813 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02142 2 475 WRKY Transcription Factor Family AT4G12020 23.164 3.28e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02142 - - gmx:100815297 528.094