Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02136 ATGGCTGAGCAGCAAATGATCAGTGTTGTTGCTTCTTCCTCTAACTCTTATTCTATGGTGTCTACTAAAAAATATGATGTTTTTCTAAGCTTTCGAGGTGAGGACACCCGCATGAACTTCACAAGCCATCTCTATGAAGCTTTGAAGCAAAAGAAAGTTGAAACCTACATAGATGTCCGGCTTGAAAAGGGAGATGAAATTTCTCCAGCACTTGTCAAAGCCATTGAAGATTCTCATGTATCTGTTGTCATCCTCTCAAAGAACTATGCTTCCTCAAAATGGTGCTTGGCTGAACTCAGCTGTATTCTGGAATGCAAGAAAGAGAAAGGACAGATTGTGATACCTGTGTTCTATAACACAGATCCATCCCATGTGAGGAAGCAGACTGGGAGCTACAAGAAAGCCTTTGCAAAACATAAGGGAGAATCCAAGTGCAACAAATGGAAAGCTGCTCTCACTGAAGTAGCCAATTTAGCTGGGTGGGACTCTCGAAACAGGGATGAATCTCAATTCCTCAAGGACATTGTTAGAGATGTTTTGCGAAAATTGCCTCCTAAATACCCAGTCGAATTTAAAGGAGTGGTTGGAATTGAGGAAAAGTATGAACTGATTGAATCATTACTAAAAATGTGGTCAAGTGAAGTTAGAACCCTTGGAATATGGGGCATGGGTGGCATAGGTAAGACCACCCTTGCTACTTTTTTATATGTCAAATTATCTCATGAGTTCGAAGGTGGTTGCTTCCTCCCAAATGTAAGGGTAGAATCATACAAGCTTGGACTCCATGCTTTACGTAGTAAACTTTTTTCTGATTTGTTAGAGAATGAAAATCATTGTTTTGATGCACCCTTTGTAGTCTACAATTTTGACATCAGTAGGCTTCAACGTAAAAGGGTTTTGATTGTCTTGGATGATGTTGCCACCTCAGAGCAATTAGAAAAGCTGACCATAAACTATGGATTCTTGGGACCAGGGAGTAGAGTCATTGTCACAACTAGAAATAAGCAAATACTTAGCCGAGTTGATGAAATATATGAGGTCAAGGAATTGAGCTTTCATCACTCTCTTCAACTTTTCTGTTTGACTGCATTTAGAGAAAAACAACCACAATATGGATTTGAAGATCTATCAAGAAGTGCAATTTTCTATTGCAAAGGTATTCCTTTGGCTTTAAAAGTTCTGGGTGCAAGTCTTATTAAAAGAAGTAAAGTGGCATGGGAATGTGAATTGAGAAAACTCCGAAAGATTCCAAATATGGAAATTTATAGTGTGTTAAAATTAAGTTATGATGGCTTAGATCATTCTGAAAAGGACATCTTTTTAGACATTGCATGCTTCTTCAAAGGATGGGATAGAGATTTTGTAACAATTATACTGGAAGCTTGCAATTACTTTGCAGCATCTGGGATAGAAGTCCTTTTAGATAAAGCTCTCATAACAATTTCATATGACAACCGGATAGAAATGCATGACTTGATACAGGAAATGGGTTGGGAAATGGTTCACCAAGAATCTGTCAAAGACATTGGAAAACAAAGTCGATTATGGAAACATGAGGAAGTTCACGATGTATTGAAATATAACAAGGGAACTGATTCTATCGAAGGCATAATTTTAGATTTGCAGAAATTAACTGCAGATCTATATTTGAGCCCTGATTCCCTTGCAAAGATGACTAATATGAGATTTCTTAAAATCCATAGTGATGAGTACTTCTACAGGTGGAGTAGTATGGAAAGATTTAAAGTATACCTTCCTAATGGTCTTGAGTCACTGTCTGATAAATTGAGATACCTCCACTGGGATAGATTCTGTCATGAGTCTTTGCCATCTAACTTTTGTGCTGAACAACTTATAGAACTTTCCATGCGTGATAGCAAGCTTAAAAAGCTTTGGGATGGGGTTCAGAATCTTGTGAATTTAAAGAAAATTGACCTTTCAGACTCCAGAGACTTGATTGAGATCCCAGACTTATCTATGGCAGAAAAGCTTGAAAGAGTTTCTCTTTCTAATTGCGAAAGCTTGTTTCAGCTTCATGTTCATTTAAAATTTCTCACTGAACTTCATCTTTGTGGTTGTTCATCTCTCAAGGAATTATTAGTCACATCAGAAGAGATGGCACGACTAGATTTAAGTGGATGTAGAATGATTGAAAGCCTTAATGTTCATTTAAAATCTCTCAAATTACTGAGACTCGATGGTTGTTCATCTCTCAGGGAAATCTCTGTGGCATCAGAGGAAATGACATGGTTGAACTTATCCAACACTGCTATATGTGCATTGTCGTCACTAGTGTTATCACTCCCCAACCTTACATATTTGAATTTAAGTGGCTACAGATTGATTAAAAGCCTTAATGTCCATTTAAAATCCCTCATTGCACTTGATCTTGATAGTTGTTCCTCTCTTAAGGAATTCTCAATGGCATCAAGGGAAATGAAAAGATTGAAGTTATCTGACACTACATACATGTGCATTGTCAGTCATCAATTGGTCACTTGTTGTCTTTAG 2511 0.3751 MAEQQMISVVASSSNSYSMVSTKKYDVFLSFRGEDTRMNFTSHLYEALKQKKVETYIDVRLEKGDEISPALVKAIEDSHVSVVILSKNYASSKWCLAELSCILECKKEKGQIVIPVFYNTDPSHVRKQTGSYKKAFAKHKGESKCNKWKAALTEVANLAGWDSRNRDESQFLKDIVRDVLRKLPPKYPVEFKGVVGIEEKYELIESLLKMWSSEVRTLGIWGMGGIGKTTLATFLYVKLSHEFEGGCFLPNVRVESYKLGLHALRSKLFSDLLENENHCFDAPFVVYNFDISRLQRKRVLIVLDDVATSEQLEKLTINYGFLGPGSRVIVTTRNKQILSRVDEIYEVKELSFHHSLQLFCLTAFREKQPQYGFEDLSRSAIFYCKGIPLALKVLGASLIKRSKVAWECELRKLRKIPNMEIYSVLKLSYDGLDHSEKDIFLDIACFFKGWDRDFVTIILEACNYFAASGIEVLLDKALITISYDNRIEMHDLIQEMGWEMVHQESVKDIGKQSRLWKHEEVHDVLKYNKGTDSIEGIILDLQKLTADLYLSPDSLAKMTNMRFLKIHSDEYFYRWSSMERFKVYLPNGLESLSDKLRYLHWDRFCHESLPSNFCAEQLIELSMRDSKLKKLWDGVQNLVNLKKIDLSDSRDLIEIPDLSMAEKLERVSLSNCESLFQLHVHLKFLTELHLCGCSSLKELLVTSEEMARLDLSGCRMIESLNVHLKSLKLLRLDGCSSLREISVASEEMTWLNLSNTAICALSSLVLSLPNLTYLNLSGYRLIKSLNVHLKSLIALDLDSCSSLKEFSMASREMKRLKLSDTTYMCIVSHQLVTCCL 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02136 836 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 443 IPR027417 -
Pumo1g02136 836 Coils Coil 836 836 - -
Pumo1g02136 836 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 741 IPR044974 GO:0006952
Pumo1g02136 836 SMART till_3 24 158 IPR000157 GO:0007165
Pumo1g02136 836 Gene3D Ribonuclease Inhibitor 461 835 IPR032675 -
Pumo1g02136 836 Pfam Leucine Rich Repeat 618 636 IPR011713 -
Pumo1g02136 836 SUPERFAMILY "Winged helix" DNA-binding domain 420 526 IPR036390 -
Pumo1g02136 836 Gene3D - 183 348 IPR027417 -
Pumo1g02136 836 Gene3D - 21 182 IPR035897 -
Pumo1g02136 836 SUPERFAMILY L domain-like 548 821 - -
Pumo1g02136 836 Pfam NB-ARC domain 202 409 IPR002182 GO:0043531
Pumo1g02136 836 PRINTS Disease resistance protein signature 217 232 - -
Pumo1g02136 836 PRINTS Disease resistance protein signature 293 307 - -
Pumo1g02136 836 PRINTS Disease resistance protein signature 384 398 - -
Pumo1g02136 836 PRINTS Disease resistance protein signature 787 803 - -
Pumo1g02136 836 ProSiteProfiles TIR domain profile. 23 183 IPR000157 GO:0007165
Pumo1g02136 836 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 161 IPR035897 -
Pumo1g02136 836 Gene3D - 349 433 IPR042197 -
Pumo1g02136 836 Pfam TIR domain 24 188 IPR000157 GO:0007165
Pumo1g02136 836 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02136 Pumo-Chr1 48737757 48741529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02136 21 820 WRKY Transcription Factor Family AT4G12020 33.701 2.70e-111 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02136 - - gmx:100813283 1075.85