LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo1g02131	ATGAAAGGGCAATTTTTTTTTATTTTATATTATTTTATTTTATTTTTGCTTTCAGTTTCAGTAGAATTCAAGATTCTAGGAAATATAGCCAAGCAAGTTTTCTCGTGGTCCTTACATTGTTTGACAAGAGCAGAGTATGACAAGGAGTGTAAGATTTGTACACGGCCATTCACTGTTTTTAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAATCTGAGATCTGTCAGACATGTAGTAAATTGAAAAATGTCTGTCAAGTGTGCCTTTTGGATCTTGAATATGGACTACCGGTTCAAGTCCGAGACACAGCTCTCAGTATTGATTCCAATGATGCTATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCACGACCGCAGGGCTAGAGCTGGTATAGATTATGAATCCTCTTATGGTAAAGTACGCCCAAATGATACTATCATGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGGGCACATATTTGCAGTTTCTACATAAGGGGTGAATGTACCAGAGGAGCTGAGTGCCCTTATAGACATGAGATGCCAGTAACTGGGGAATTGTCTCAACAAAATATTAAAGATCGTTATTATGGGGTGAATGATCCAGTGGCTTTGAAGCTACTTGGCAAGGCAGGAGAGATGTCCACTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACACTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGATCACTTCTATGCCCATGGAGAAATTGAATCCATCAAAATGGTTCTCCAACGCGCTTGTGCTTTTGTAACATATACAACCAGAGAAGGTGCAGAAAAGGCCGCAGAAGAACTCTCCAACAAACTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACATCAAAACCGGAGTCTGACGGTTCTGATCAAGCAAGGCAGCAGGCATCTGTAGCTCATAGCGGATTGTTGCCTCGAGCAGTTATATCACAGCAGCAGAACCAGGACCAAGCCCAAGGAATGCTATACTATAACAATCCACCACCTCTTCCGCAGGAAAGAAGCTACTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTGTTTCATCCCAAGACGGTCCTCCTGGTGGGCCTTCTGGGTCGGGGGAGAACAAGCCCGGTTTGGAGAAGCCGCAAATGCAACATTATGCCCATCCAATGATGCCTCCTCCTCCTGGCCAATACCATCATCAGTACCCACCACCTCCCCCTTATCATCAGTACCCACCACCTCCCCCTTATCATCAGTACCCACCACCTCCATACAATGCTGCAGTGGCTCCATCCCTGCCACCAGCTGCAAATCATCCTTATCAGCATTCTATGCAGCCAGGGTCTTCACAGACAGGATCTTCACAGGCTGCATCTGCCCCAGCTGAAACTGGAACATCAACATCAGGGTCACAGCAGCAATAA	1482	0.4521	MKGQFFFILYYFILFLLSVSVEFKILGNIAKQVFSWSLHCLTRAEYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRRARAGIDYESSYGKVRPNDTIMKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMSTLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQAQGMLYYNNPPPLPQERSYYPSMDPQRMGALVSSQDGPPGGPSGSGENKPGLEKPQMQHYAHPMMPPPPGQYHHQYPPPPPYHQYPPPPPYHQYPPPPYNAAVAPSLPPAANHPYQHSMQPGSSQTGSSQAASAPAETGTSTSGSQQQ	493

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo1g02131	493	MobiDBLite	consensus disorder prediction	461	493	-	-
	Pumo1g02131	493	Gene3D	-	154	215	-	-
	Pumo1g02131	493	MobiDBLite	consensus disorder prediction	406	449	-	-
	Pumo1g02131	493	ProSiteProfiles	Zinc finger C3H1-type profile.	163	190	IPR000571	GO:0046872
	Pumo1g02131	493	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	234	307	IPR000504	GO:0003723
	Pumo1g02131	493	PANTHER	PRE-MRNA-SPLICING FACTOR RBM22	42	383	IPR039171	GO:0003723
	Pumo1g02131	493	FunFam	Zinc finger CCCH domain-containing protein 4	155	214	-	-
	Pumo1g02131	493	MobiDBLite	consensus disorder prediction	305	327	-	-
	Pumo1g02131	493	SMART	c3hfinal6	163	189	IPR000571	GO:0046872
	Pumo1g02131	493	FunFam	Zinc finger CCCH domain-containing protein 40	219	315	-	-
	Pumo1g02131	493	CDD	RRM_RBM22	233	306	-	-
	Pumo1g02131	493	MobiDBLite	consensus disorder prediction	349	493	-	-
	Pumo1g02131	493	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	236	294	IPR000504	GO:0003723
	Pumo1g02131	493	Pfam	Torus domain	152	200	IPR032297	-
	Pumo1g02131	493	Gene3D	-	218	316	IPR012677	-
	Pumo1g02131	493	SMART	rrm1_1	235	303	IPR000504	GO:0003723
	Pumo1g02131	493	SUPERFAMILY	CCCH zinc finger	165	188	IPR036855	GO:0046872
	Pumo1g02131	493	SUPERFAMILY	RNA-binding domain, RBD	228	316	IPR035979	GO:0003676
	Pumo1g02131	493	MobiDBLite	consensus disorder prediction	310	326	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo1g02131	Pumo-Chr1	48442341	48446134	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo1g02131	221	295	Eukaryotic Initiation Factors Gene Family	AT1G49760	35.000	2.33e-07	51.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo1g02131	K12872		-	gmx:100779917	770.385