Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02127 ATGTCGGGTCGAGGAGGAGGAAGGGACCGGTTTAGGAGGGATTACCCTTCAAGGTATGATGATAATAGGGGGAATGGGGTTAGTGGACGTGACAACCGCAAAAGCAACAGCAACAGCAACAACCCTCCTTCCAGGCATCTTTGGGTTGGGAATCTATCCCACAATATTGTGGAGGAAGAACTCGCTCACCATTTCTTGAGGTATGGACCACTGGAGAATGTGGCATTCCAGCCCGGCCGCAGCTATGCTTTCATAAATTTCAGAATGGATGAGGATGCTATTGATGCCATGAGAGCACTGCAAGATTTTCCTCTTGCTGGCAACCCACTTAGAATCGAGTTTGCAAAGGCGGATAAGCCATCAGCAATGCAACGTGATGAAGATTACTCATGGGATGAACGGAACTCGACATTAAGGGGTTCTCCTTTCTCGCAAAGAGAGTTTAGAGGACACCATGGTAGCCCTGAACCGCATTATTCTGATAAATCCAAGCTGAGTGATAAAAATCCAGAACCCAGTGAGGTTCTTTGGATTGGGTTCCCAGCTCAGTTGAAGGTGGACGAATCAATTTTAAGAAAGGCTTTTTCTCCATTTGGTGAGATAGTGAAGATTACTACATTTCCCGGTCGTAGTTATGCCTTTGTTCGCTTTAGGAGCCTGACATCTGCATGCAGAGCAAGAGATAATCTGAAGGGGAAGTTATTTGGGAATCCCCGTGTACATATTTGTTTTGCCAAGAGTGAAACAGGTTCATCAAACAGTGAGAGGAGATCATTTAATGGCCCCCGTTCCCCAATTTACAAGTCAAGTGGGCGCGATGGATCTTCTGAGAACCTCAGACAGGATCGGAGCTTCAATGCAGATCGCAACATTGGTTCTCCAAACCATTTCCGGAATTGGGATTCTGATCCTTATGATCTTGACAAAAGGGGTTCTTCATGGGCTGGTGGAGCTAACACATATGAGCCAAGGAAAGTCGGAGAGAAGGGGAGAACACTAGGAGTATCAGAAGACATCTATGAACATATGAATAGTCCATCAAGAGAAAGACGCGTGCATGTGGGTGATTTTCCACAGAGATTTCCTCAAAAGGGTGCATTCTATGAAGATCTGCGGGCCTTGCCAGATGTTCCCTATCTACGTGAGGCTAAAAGGATGAAGACTGGTTCTCCTCCTCTTGAAAGAGAGATTCCAGAGTATTCTTTCTCTGAGTTAGAAAGACAGAGACGTGTTTTCCCGAGATTATTATCTGATTTACCCCCACACGAGCCTTTTGATAAAGGCTTTGATGCTGGAAATTTTACTTATGGCCAGACTCTTCTTGATCACCCCCCAAATTCACCTCTGCCTAGTTTAGATAGACATGAAGGCTGGAAACCTTATGATAGTTTCCAAGCGGGTCCCAGTGCTCTGCAGTCAACTTATGTTGAGAAGAAAAGATTCACGCCTGAACCTGAACCTGATAGTTCATCTTTAACTGAGTGGAAATGGGAAGGAACCATTGCTAAAGGTGGAACCCCTGTTTGTCGTGCACGCTGCTTCCCTGTGGGGAAAGTCCTAGATATCATGCTACCTGAATTCTTGGATTGCACTGCAAAAACTGGTCTAGATATGCTTTCAAAGCATTACTACCAAGCAGTTGGTGTTTGGGTTGTTTTCTTTGTGCCTGGAAGTGATGCTGACATGGAATGCTACAATGAATTTATGCATTATCTGGAGGAAAAGCAGCGCGCCGCAGTTTCCAAGTTGGACGACAGGACCACCTTATTTCTTGTTCCTCCATCTGAGTTCTCAGAGAAAGTACTGAAGGTACCTGGTAGGTTGAGCATATCTGGTGTCATTCTGAGGTTGGAGAATCCTGGTTTAAATCATGGTCCTGAACACATTCAAAGAGAAATGACAAACGAAAACCTGCTGTCCTATAACGAGAATATTCTGCATCCGAAGTCAACATTTCCTTCAGTGCGTGTACCTACATCCCCATCTATTTCAGAATTGGGTAATTCTGGAATCAGCAATCTTTCATATCTGGGAAATAAATTTGCAGCAGCTCCATCAGTTTCTGATTCAGCTCGTGCCGTGGCAAGCATGTCTGAGTCTCATGATGAAAGAAGTCGCAACTATCCTATTCAACAACGGACTTTTGGACCAAACTGGTCTTCTCAAAATCCGCAGAACTTCTCTAATCGAACTCTACCATTGCAACCATCAGGTGGTGCCGTAGAACCTATTGCTGAAGAACGCCAACCCATCATTCCAAGGGCAGCGCTGGATGTAAATGCGATTCAACATTCCGGTGGAATTTCTGGTATTCCATTTTATGGTGATAGCAAGTTGTCTTACCCAGATATAAGACATTTAGATCCTTTATCAGTGCCTGTGGGAGCCCTTCCACCAGAACAACTTGCACAACTAGCTGCATCTCTTCTTGAGCAGCAGAGGCAATCAGGAAGCTCTTCGAGTACATCTGCATTGGCTGATCCCCGGCAGATTAACAGATTTAGCACATCCGACACCTCATCGAGATTTAGCTCGTCCGACACCTCATCCAGACCACCCGGTCCACCCCAGAAATATGCTACAGAAAATAATCCGGTGAATTCTGATCTCTCAACATCTCAGCTGGGTCAAATGCTACAGATGCAAAAGCAACAACCGATCTCAAATGTGCCTCAGTTGTCACAGATGGTTCAAAGGGAATCACAAAGAGAGGCTAATGGAAATCAGCTGGATAGCAGCTTGCAGGAAGATGCCGATGCAGATCCACAGAAACGTCTACACGCAACACTGCAGCTGGCTGCTGTTCTTCTTCAGCAAATTCAGCAAGGAAAAGGAAGTTGA 2841 0.4534 MSGRGGGRDRFRRDYPSRYDDNRGNGVSGRDNRKSNSNSNNPPSRHLWVGNLSHNIVEEELAHHFLRYGPLENVAFQPGRSYAFINFRMDEDAIDAMRALQDFPLAGNPLRIEFAKADKPSAMQRDEDYSWDERNSTLRGSPFSQREFRGHHGSPEPHYSDKSKLSDKNPEPSEVLWIGFPAQLKVDESILRKAFSPFGEIVKITTFPGRSYAFVRFRSLTSACRARDNLKGKLFGNPRVHICFAKSETGSSNSERRSFNGPRSPIYKSSGRDGSSENLRQDRSFNADRNIGSPNHFRNWDSDPYDLDKRGSSWAGGANTYEPRKVGEKGRTLGVSEDIYEHMNSPSRERRVHVGDFPQRFPQKGAFYEDLRALPDVPYLREAKRMKTGSPPLEREIPEYSFSELERQRRVFPRLLSDLPPHEPFDKGFDAGNFTYGQTLLDHPPNSPLPSLDRHEGWKPYDSFQAGPSALQSTYVEKKRFTPEPEPDSSSLTEWKWEGTIAKGGTPVCRARCFPVGKVLDIMLPEFLDCTAKTGLDMLSKHYYQAVGVWVVFFVPGSDADMECYNEFMHYLEEKQRAAVSKLDDRTTLFLVPPSEFSEKVLKVPGRLSISGVILRLENPGLNHGPEHIQREMTNENLLSYNENILHPKSTFPSVRVPTSPSISELGNSGISNLSYLGNKFAAAPSVSDSARAVASMSESHDERSRNYPIQQRTFGPNWSSQNPQNFSNRTLPLQPSGGAVEPIAEERQPIIPRAALDVNAIQHSGGISGIPFYGDSKLSYPDIRHLDPLSVPVGALPPEQLAQLAASLLEQQRQSGSSSSTSALADPRQINRFSTSDTSSRFSSSDTSSRPPGPPQKYATENNPVNSDLSTSQLGQMLQMQKQQPISNVPQLSQMVQRESQREANGNQLDSSLQEDADADPQKRLHATLQLAAVLLQQIQQGKGS 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02127 946 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 117 IPR000504 GO:0003723
Pumo1g02127 946 FunFam RNA recognition motif (RRM)-containing protein 160 253 - -
Pumo1g02127 946 FunFam RNA recognition motif (RRM)-containing protein 26 139 - -
Pumo1g02127 946 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 247 IPR000504 GO:0003723
Pumo1g02127 946 PANTHER RNA RECOGNITION MOTIF-CONTAINING 31 940 - -
Pumo1g02127 946 Pfam SPOC domain 490 604 IPR012921 -
Pumo1g02127 946 CDD RRM_SF 185 242 - -
Pumo1g02127 946 MobiDBLite consensus disorder prediction 698 731 - -
Pumo1g02127 946 MobiDBLite consensus disorder prediction 250 280 - -
Pumo1g02127 946 MobiDBLite consensus disorder prediction 709 731 - -
Pumo1g02127 946 MobiDBLite consensus disorder prediction 1 28 - -
Pumo1g02127 946 CDD SPOC_FPA-like 496 615 - -
Pumo1g02127 946 MobiDBLite consensus disorder prediction 892 916 - -
Pumo1g02127 946 SUPERFAMILY RNA-binding domain, RBD 185 275 IPR035979 GO:0003676
Pumo1g02127 946 MobiDBLite consensus disorder prediction 118 134 - -
Pumo1g02127 946 MobiDBLite consensus disorder prediction 250 274 - -
Pumo1g02127 946 MobiDBLite consensus disorder prediction 892 925 - -
Pumo1g02127 946 Gene3D - 160 258 IPR012677 -
Pumo1g02127 946 MobiDBLite consensus disorder prediction 1 46 - -
Pumo1g02127 946 MobiDBLite consensus disorder prediction 117 170 - -
Pumo1g02127 946 MobiDBLite consensus disorder prediction 285 304 - -
Pumo1g02127 946 CDD RRM_SF 47 113 - -
Pumo1g02127 946 MobiDBLite consensus disorder prediction 145 169 - -
Pumo1g02127 946 SMART rrm1_1 175 243 IPR000504 GO:0003723
Pumo1g02127 946 SMART rrm1_1 46 113 IPR000504 GO:0003723
Pumo1g02127 946 MobiDBLite consensus disorder prediction 809 871 - -
Pumo1g02127 946 SUPERFAMILY RNA-binding domain, RBD 32 126 IPR035979 GO:0003676
Pumo1g02127 946 Gene3D - 29 135 IPR012677 -
Pumo1g02127 946 MobiDBLite consensus disorder prediction 29 46 - -
Pumo1g02127 946 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 239 IPR000504 GO:0003723
Pumo1g02127 946 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02127 Pumo-Chr1 48291374 48310247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02127 30 265 Eukaryotic Initiation Factors Gene Family AT1G22760 24.390 8.85e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02127 - - gmx:100811668 1574.68