Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02116 ATGGGAAACACTTGTGCAAAAGGAAAACCAGTTGCTCATGTATCTTCCTCCAATTTTTCTGGAAGCAAGAGGCCTGTAAGCAAGCCAAAGCAGTATTCAAATTCTTCTGAACAACAACCTGCTCCAAAAACTTTAGAATTAAATGTTGCCAAATCCATATCCAGCAACCTTAAGCCCTTCAGCTTGAATTATCTAAAGGAGGCCACTAAGAACTTCCGGCGAGAAAATTTAATTGGAGAGGGAGGATTCGGGCGTGTCTTCAAAGGATGGATTGATGAGAACACATATGGTCCTACAAAACCTGGCAGTGGAATTGTAGTGGCCATTAAAAATCTTAAGCCAGAAAGCTTCCAAGGCCACAAGGAATGGCTTCAAGAAGTCAATTATCTTGGGCAGCTTCAGCATGAAAACTTGGTGAAACTTATTGGTTATTGCTTGGAAGGTAAAAACAGGCTTCTGGTTTATGAGTTCATGCAGAAAGGAAGTTTGGAGAGTCATTTATTCAGAAAGGGTGTTCAACCTATGCCTTGGGTTACAAGGGTCAACATTGCAATTGGTGTTGCAAGAGGATTAACATTCTTACATTCCCTGGATCAAAATGTTATCTTTCGCGATTTAAAGGCTTCCAATATCCTACTTGATTCGGACTTCAATGCAAAGCTTTCTGATTTTGGCTTGGCAAGAGATGGTCCTACTGGAGATAATACTCACGTTTCAACTAGAGTTATAGGAACTCAAGGGTATGCTGCACCAGAGTATGTTGCTACAGGTCATTTGACTCCAAGGAGTGATGTATACAGCTTTGGTGTAGTCTTGTTAGAGTTGCTAACCGGAAGGCGCGCGGTGGAAGACGATGGACCTGGATTTTCAGAGGAAACCCTGGTGGATTGGGCAAAGCCATTCTTGAGTGACAACAGAAGAGTTTTGAGAATAATGGATACAAGGTTGGGGGGTCAATACTCTAAGAAAGGAGCACAAGCTGCAGCTGCTCTTGCATTGCAATGCCTTAACACAGACCCCAAATTCAGACCACCTATGGTGGAAGTTCTTGCAGCATTGGAAGCACTTAATTCCTCAAATTCATTTACAAGGACACCAAAATCTGAGATTCATGCAACCAAACATTCTGGTGGCCCTTCACAAAAGTAA 1149 0.423 MGNTCAKGKPVAHVSSSNFSGSKRPVSKPKQYSNSSEQQPAPKTLELNVAKSISSNLKPFSLNYLKEATKNFRRENLIGEGGFGRVFKGWIDENTYGPTKPGSGIVVAIKNLKPESFQGHKEWLQEVNYLGQLQHENLVKLIGYCLEGKNRLLVYEFMQKGSLESHLFRKGVQPMPWVTRVNIAIGVARGLTFLHSLDQNVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRAVEDDGPGFSEETLVDWAKPFLSDNRRVLRIMDTRLGGQYSKKGAQAAAALALQCLNTDPKFRPPMVEVLAALEALNSSNSFTRTPKSEIHATKHSGGPSQK 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02116 382 MobiDBLite consensus disorder prediction 362 382 - -
Pumo1g02116 382 MobiDBLite consensus disorder prediction 1 43 - -
Pumo1g02116 382 ProSitePatterns Protein kinases ATP-binding region signature. 78 110 IPR017441 GO:0005524
Pumo1g02116 382 ProSiteProfiles Protein kinase domain profile. 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g02116 382 PANTHER OS01G0588500 PROTEIN-RELATED 36 356 - -
Pumo1g02116 382 MobiDBLite consensus disorder prediction 10 43 - -
Pumo1g02116 382 FunFam PTI1-like tyrosine-protein kinase 3 158 365 - -
Pumo1g02116 382 Pfam Protein tyrosine and serine/threonine kinase 75 352 IPR001245 GO:0004672|GO:0006468
Pumo1g02116 382 CDD STKc_IRAK 78 356 - -
Pumo1g02116 382 SUPERFAMILY Protein kinase-like (PK-like) 51 359 IPR011009 -
Pumo1g02116 382 Gene3D Phosphorylase Kinase; domain 1 47 157 - -
Pumo1g02116 382 Gene3D Transferase(Phosphotransferase) domain 1 158 376 - -
Pumo1g02116 382 SMART serkin_6 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g02116 382 FunFam Serine/threonine-protein kinase BIK1 39 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02116 Pumo-Chr1 47942990 47947009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02116 51 359 Glycoside Hydrolase AT3G07070 49.682 1.38e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pumo1g02116 PK_Tyr_Ser-Thr 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02116 - - gmx:100800654 703.36