Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02111 ATGGCCGAGGCTGAGCAGCAAATGATCAGTGCTTTTGCTTCTTCCTCTAACTCTTCTTCCATGGTGTCTTCTAAAAAATATGACATTTTTCTAAGCTTTCGAGGTGAGGACACCCGTAAGAACTTCACAAGTCATCTTCATGAAGCTTTGGTGCAAAAGAAAGTTGAAACCTATATAGACTACCGGCTTCAAAAGGGAGATGAAATCTCACCAGCACTCATCAAAGCCATCGAAGATTCTGATGTATCTGTTGTCATCCTCTCAGAGAACTATGCTTCCTCAAAGTGGTGCTTGGAAGAACTCAACAAGATTCTAGAATGCAAGAAAAGCCAAGGACAGATAGTGATACCGGTATTCTACAACATCGATCCATCCCATGTGAGGAAGCAAACTGGGAGCTATGAGCAAGCCTTTGCAAAACATGAGGGAGAACCAAAGTGCAACAAATGGAAAGCTGCTCTCACTGAAGTAGCTAATTTAGCTGGGTGGGACTCCCGAGACAGGACTGAATCTGAACTCCTTAAGGACATTGTCAGAGACATTTTGCAAAAATTAACTCCTAGATACCCAAACCAACTAAAAGGACTGGTTGGAATTGAGGACAATTGTGAACAGATTGAATCTTTACTAAAAATGGGGTCAAGTGAAGTTAGAACCCTTGGAATATGGGGCATGGGTGGCATAGGAAAAACCACCCTTGCTACTGTTTTGTATGCCAAACTATCTCCTGAGTTCGAAATTGGCTGCTTCCTGGCAAATGTTATGGAAAATTCAAACAGGCATGGTGGACTCGAAGTTTTACGCAATAAACTTTTTTCTAAGTTGTTAGAGAATGAAAATAATTGTTTTGATGCACCCATTTTAGTACCTGATTTCGTCATGCGTAGGCTTAGTCATAAAAAAGTTTTCATTGTGCTGGATGATGTGGCTACCTTCAAGCAATTAGAATATCTAATTAAAGATTATGATTTGTTGGGACCAGGAAGTCGAGTCATTGTTACAACTAGAAATAAGCAAATATTTAGCCAAGTTGATGAAGTATATGAGATCAAGAAATTGAGTTCTCATCAATCTCTTCACCTTTTCTGTTTAAATGTTTTTGAAGAAGAACAACCTAAACAAGGATACGAAGATCTATCAAGAAGTGCAATTTCCTATTGCAACGGTATTCCTCTGGCTTTAAAAGTTCTTGGTGCAAGTCTTCGTCGAAGGAGTAAAGAGGCATGGGAAAGTGAATTGAGAAAACTCCAGATGATCCAAAATACAGAAATTTATTATGTATTAAAATTAAGTTATGATGCCTTAGACAATTCTCAACAGGACATCTTTTTAGACATTGCATGCTTCTTCATTGGAGAAAGAAAAGATTTGGTAACAAGTGTACTAGAAGCTTGTGAATTCTTTGCAGCATCTGGGATAGAAGTCCTCTTGGATAAAGCTCTCATAACAATTTCAAATTCAAATTGCATAGTTATGCATGACTTGATACAGCAAATGGGTCAAGAAATTGTTCGTCAAGAATCAATCAAAGATCCTGGAAGACGAAGTCGATTATGGAAACATGAGGAAGTGCATGAAGTATTGAAATATAACACGGGAACTAATGTTGTTGAAGGCATAACTTTAGATTTGCATAAATTAACTGAAGATCTATATTTGAAATCTAATTCCTTCACAAAGATGACCAACATGAGATTTCTTAAAATCCATGATGACTGGTCGACAAATGGATTTAATGTGCACCTTCCTAACGGTCTTGAGTCATTGTCGTATAAATTGAGGTACCTTCATTGGGATAGATTCTGTCTCGAGTCTTTGCCATCTAACTTTTGTGCTGAACAACTTGTAGAGCTTCACATGCCTTACAGCAAGGTTAAAAAGCTTTGGGACGGGGTTCAGGTATCTTTCTGCAAAAAGATTGAAAGACTTAATATCCATTCAAAATCTCTCCGTGAATTGTTTCTGTATCGTTGTCCATCTCTCAAGGAATTCTTAGTGACATCAGAGGAAATTATTGAGTTGGACTTATCTGATACCTCTATATGTGCATTGTCGTCATCCATTTGGCGTAATAGGAAACTTACATCTCTTTCTCTAAGGGGTTGTAACAATCTTGACAAGTTGTCAGATGATAGGGGAATGGAATCCATTACAGCACTGGACCATTATGGGGGTACGCAGCACAATGCATGCAAATTGTTATCCATTCAAGCACTTTTTCACAACATTGGTCACTTTTCGTCTTTAGAAAAGTTAGACCTAAGGGAAACTGATATTGAGAGCTTGCCTGCAAACATAAAAAACCTTTCATTGTTGACACAACTTCGGTTAGATAACTGCAGAAAACTCATCTCTCTGCCGGAGCTTCCACCATCCCTGACATGGCTTGACATGAATAATTGCTGGAAACTCATGTCTCTGCCAGAGCTTCCACCATTGGTTAACTTGATGAGCGCCTGTAACTGCAATTCTTTGGAGACAAACTTCACTCAACGGCTGGTGTTACAACACATGTTACAGAGTCGCATACCCTACGTACACCAGCAATATCTTAATGATCCGTGGTATGATGACTATGAGTATTTCATGTTCCCAAGATATCAGGTCACGAAAGATTGTGGGCTTCAAACAGCGGGGAGTTCAATAACTATTCCTTATCTTCCACTATCATCTGACTTCTGTGGTTTCATCTTATGCATCATTCTTTCTAATGGATTATGGAATGGTGTTGTTAAGTGTACTATCTATCAAGATGATAAACAAGTTGGCAGGGAGAAAGGCTTTTTAATTGGCAGTAATTTAATTTCAAATCATGTGTTATTTTCGTATGTTAAAAGGTGGCATGTTTTTAACAACAATTTTCCATTTAAATTAGAATTTGATTTCTATGACTATAGTAGACATGAACACCGTCAAGAGAGCATAAAAGAGTGTGGGGTCTTCCCAGTATATGCCTCAGAATCGGGGTTGAAGCTGTTTGGAAGTAGAATCAAGGAAATTATTGAATTGGAATCCATTACTCAAATCTCTGGTAATGAGTCACAGCCCAGAGCAAATGGAGTTGGAGTTGGAGGCTCTAATAATGGAAACAAAGACTTGGAACAACTTCTTCCTGCATCGAAGAGGAGGAGGATTTTACCATAA 3144 0.3849 MAEAEQQMISAFASSSNSSSMVSSKKYDIFLSFRGEDTRKNFTSHLHEALVQKKVETYIDYRLQKGDEISPALIKAIEDSDVSVVILSENYASSKWCLEELNKILECKKSQGQIVIPVFYNIDPSHVRKQTGSYEQAFAKHEGEPKCNKWKAALTEVANLAGWDSRDRTESELLKDIVRDILQKLTPRYPNQLKGLVGIEDNCEQIESLLKMGSSEVRTLGIWGMGGIGKTTLATVLYAKLSPEFEIGCFLANVMENSNRHGGLEVLRNKLFSKLLENENNCFDAPILVPDFVMRRLSHKKVFIVLDDVATFKQLEYLIKDYDLLGPGSRVIVTTRNKQIFSQVDEVYEIKKLSSHQSLHLFCLNVFEEEQPKQGYEDLSRSAISYCNGIPLALKVLGASLRRRSKEAWESELRKLQMIQNTEIYYVLKLSYDALDNSQQDIFLDIACFFIGERKDLVTSVLEACEFFAASGIEVLLDKALITISNSNCIVMHDLIQQMGQEIVRQESIKDPGRRSRLWKHEEVHEVLKYNTGTNVVEGITLDLHKLTEDLYLKSNSFTKMTNMRFLKIHDDWSTNGFNVHLPNGLESLSYKLRYLHWDRFCLESLPSNFCAEQLVELHMPYSKVKKLWDGVQVSFCKKIERLNIHSKSLRELFLYRCPSLKEFLVTSEEIIELDLSDTSICALSSSIWRNRKLTSLSLRGCNNLDKLSDDRGMESITALDHYGGTQHNACKLLSIQALFHNIGHFSSLEKLDLRETDIESLPANIKNLSLLTQLRLDNCRKLISLPELPPSLTWLDMNNCWKLMSLPELPPLVNLMSACNCNSLETNFTQRLVLQHMLQSRIPYVHQQYLNDPWYDDYEYFMFPRYQVTKDCGLQTAGSSITIPYLPLSSDFCGFILCIILSNGLWNGVVKCTIYQDDKQVGREKGFLIGSNLISNHVLFSYVKRWHVFNNNFPFKLEFDFYDYSRHEHRQESIKECGVFPVYASESGLKLFGSRIKEIIELESITQISGNESQPRANGVGVGGSNNGNKDLEQLLPASKRRRILP 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02111 1047 Gene3D - 182 352 IPR027417 -
Pumo1g02111 1047 PRINTS Disease resistance protein signature 296 310 - -
Pumo1g02111 1047 PRINTS Disease resistance protein signature 219 234 - -
Pumo1g02111 1047 PRINTS Disease resistance protein signature 387 401 - -
Pumo1g02111 1047 PRINTS Disease resistance protein signature 767 783 - -
Pumo1g02111 1047 Pfam TIR domain 26 197 IPR000157 GO:0007165
Pumo1g02111 1047 FunFam Disease resistance protein (TIR-NBS-LRR class) 23 187 - -
Pumo1g02111 1047 Gene3D - 353 436 IPR042197 -
Pumo1g02111 1047 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 163 IPR035897 -
Pumo1g02111 1047 SUPERFAMILY L domain-like 491 818 - -
Pumo1g02111 1047 ProSiteProfiles TIR domain profile. 25 185 IPR000157 GO:0007165
Pumo1g02111 1047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 446 IPR027417 -
Pumo1g02111 1047 Gene3D - 23 181 IPR035897 -
Pumo1g02111 1047 Pfam Leucine Rich Repeat 614 633 IPR011713 -
Pumo1g02111 1047 Gene3D Ribonuclease Inhibitor 671 842 IPR032675 -
Pumo1g02111 1047 Gene3D Ribonuclease Inhibitor 527 670 IPR032675 -
Pumo1g02111 1047 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 803 IPR044974 GO:0006952
Pumo1g02111 1047 SMART till_3 26 160 IPR000157 GO:0007165
Pumo1g02111 1047 Pfam NB-ARC domain 204 422 IPR002182 GO:0043531
Pumo1g02111 1047 MobiDBLite consensus disorder prediction 1012 1034 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02111 Pumo-Chr1 47644787 47649204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02111 23 811 WRKY Transcription Factor Family AT4G12020 33.459 1.62e-110 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02111 - - gmx:100813283 1224.92