Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02110 ATGGCTAGAGAGATCAAAACTGGTGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAAGGGTTTCCTATAACTGCCATACGTGAAATCAAAATTCTAAAGAAACTACACCATGAAAATGTAATCAAGTTGAAAGAAATTGTGACTTCTCCAGACGGTAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTGACAGGTCTTGCTGACCGACCTGGGATGAGATTCACAGTTCCCCAAATTAAGTGTTACATGAGACAGCTTCTGACTGGGCTGCATTACTGTCACGTAAATCAAGTACTTCACCGTGATATCAAAGGTTCAAATCTTCTCATAGATAATGAAGAACAATTAAATAAGATTTTTGAGCTGTGCGGAGCACCAGATGAGGTGAACTGGCCTGGTGTTTCTAAGACTCCTTGGTATAATCAATTTAAGCCAACAAGACCAATGAAAAGACGTCTCCGGGAAGTTTTCAGACATTTTGATCGTCATGCTCTGGAATTGTTGGAGAAGATGCTGACACTTGATCCTGCTCAGTTATCTAACATGTTTTACAAATTGCCTTTTGAGCTTATGGCAGAAATGGTATCATCTGGTTTTAGTTCTGAGTGA 642 0.3894 MAREIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEEQLNKIFELCGAPDEVNWPGVSKTPWYNQFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPAQLSNMFYKLPFELMAEMVSSGFSSE 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02110 213 SMART serkin_6 1 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g02110 213 ProSitePatterns Serine/Threonine protein kinases active-site signature. 109 121 IPR008271 GO:0004672|GO:0006468
Pumo1g02110 213 SUPERFAMILY Protein kinase-like (PK-like) 2 189 IPR011009 -
Pumo1g02110 213 Pfam Protein kinase domain 2 130 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g02110 213 PANTHER CELL DIVISION PROTEIN KINASE 2 123 - -
Pumo1g02110 213 Gene3D Transferase(Phosphotransferase) domain 1 72 124 - -
Pumo1g02110 213 Gene3D Transferase(Phosphotransferase) domain 1 125 196 - -
Pumo1g02110 213 ProSiteProfiles Protein kinase domain profile. 1 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g02110 213 Gene3D Phosphorylase Kinase; domain 1 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02110 Pumo-Chr1 47321020 47323373 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02110 122 189 Core Cell Cycle Gene Families AT5G10270 79.412 3.42e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pumo1g02110 Pkinase 3.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02110 K08819 - atr:18443062 248.054