Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02108 ATGAAACACCATGAAGTTGATGGAAAAGTGGGGGCTGGTGCCCTGTTCTTCAAGGTCAGTATGGATGGTGCTCCCTATTTAAGGAAAGTAGACTTGAAGAATTACTCTACATATCAAGAATTATCTTCTGCATTAGAAAAGATGTTCAGCTATTTTACTATAAGTCAATGTGGATCTCATGGAATTCTCGGCAGGGAGATGCTGAATGAAACCAAGCTGAAGGACCTTCTTCATGGATCAGAATATGTTCTTACATATGAGAACAAAGATGGAGATTGGATGCTTGTGGGTGATGTTCCCTGGGACATTCCAAGGAGCAAGCTTATAATTTGCAGAGAAACAATTCCTCAATTCGTGAATGGAGGGCTGAAGGAAATGGTGAAGAGTTTTGAAGTAAACATGTAG 405 0.4025 MKHHEVDGKVGAGALFFKVSMDGAPYLRKVDLKNYSTYQELSSALEKMFSYFTISQCGSHGILGREMLNETKLKDLLHGSEYVLTYENKDGDWMLVGDVPWDIPRSKLIICRETIPQFVNGGLKEMVKSFEVNM 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02108 134 Pfam AUX/IAA family 9 103 IPR033389 -
Pumo1g02108 134 ProSiteProfiles PB1 domain profile. 14 113 IPR000270 GO:0005515
Pumo1g02108 134 Gene3D - 9 119 - -
Pumo1g02108 134 SUPERFAMILY CAD & PB1 domains 13 103 - -
Pumo1g02108 134 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 110 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02108 Pumo-Chr1 47140770 47144238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02108 18 102 B3 DNA Binding Superfamily AT2G46530 34.118 1.53e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pumo1g02108 AUX_IAA 8.2e-47 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02108 K14484 - gmx:100783314 186.037