Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02106 ATGGCTACAGAGATCAAAACTGGGGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAAGGGGTTCCTATAACTGCCATACGTGAAATCAAAATTCTAAAGAAACTACACCATGAAAATGTAATCAAGTTGAAAGAAATTGTGACTTCTCCAGACGGTAACAAATATAAAGGTGGCATCTATATGGTCTTGGAATACATGGACCATGATTTGACAGGTCTTGCTGACCGACCTGGGATGAGATTCACAGTTCCCCAAATTAAGGTATCACTACAGCTTCTGACTGGGCTGCATTACTGTCACGTAAATCAAGTACTTCACCGTGATATCAAAGGCGTCCTTTTGCTAATGTCTTTCAAAGATACATATACAGGTTCAAATCTTCTCATAGATAATGAAGCCTACAGTGTATATACTCATGGTAATTGTTTGTATTACAGCTTGAAGCCAGAACAATTAAATAAGATTTTTGAGCTGTGCGGAGCACCAGATGAGGTGAACTGGCCTGGTGTTTCTAAGACTCCTTGGTATAATGAATTTAAGCCAACAAGACCAATGAAAAGACGTCTCCGGGAAGTTTTCAGACATTTTGATCGTCATGCTCTGGAATTGTTGGAGAAGATGCTGACACTTGATCCTGCTCAGATACCTTGTATTCCTGGTTTTCTTACACTACGCTGA 690 0.3971 MATEIKTGEIVALKKIRMDNEREGVPITAIREIKILKKLHHENVIKLKEIVTSPDGNKYKGGIYMVLEYMDHDLTGLADRPGMRFTVPQIKVSLQLLTGLHYCHVNQVLHRDIKGVLLLMSFKDTYTGSNLLIDNEAYSVYTHGNCLYYSLKPEQLNKIFELCGAPDEVNWPGVSKTPWYNEFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPAQIPCIPGFLTLR 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02106 229 Pfam Protein kinase domain 2 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g02106 229 Gene3D Transferase(Phosphotransferase) domain 1 140 226 - -
Pumo1g02106 229 Gene3D Transferase(Phosphotransferase) domain 1 72 139 - -
Pumo1g02106 229 PANTHER CELL DIVISION PROTEIN KINASE 2 121 - -
Pumo1g02106 229 Gene3D Phosphorylase Kinase; domain 1 1 71 - -
Pumo1g02106 229 ProSiteProfiles Protein kinase domain profile. 1 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g02106 229 SUPERFAMILY Protein kinase-like (PK-like) 2 218 IPR011009 -
Pumo1g02106 229 SMART serkin_6 1 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02106 Pumo-Chr1 46851950 46854126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02106 1 218 Core Cell Cycle Gene Families AT5G10270 63.603 4.75e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pumo1g02106 Pkinase 5.6e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02106 K08819 - cpap:110816930 328.946