Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02093 ATGCAGGCAGGGGTGCTCCCTTCTTCCCTGTGGGTGGCATTGCTGGACAATCAATCTGGTGCACATCTGTTGTTCTTTCTGGTGGTTAGGTTGATGACGAGGATCATGGAAATGGTTTCTCTACACTGGAAGGAGGAAGATTCTCGTTGGAAGTGGAAGAAACCACCACCTCCCAGCAGACAAAAGGTTCAAAATGTGGAACCCGTGGAGGTAGCAAGGGCAAAGTCAGCTAAAGAAGTAAAGAAATTCCAACTTAAGTCAATCAAGGAACAATTGCAGAGAGGGTTCTCGTGCATGATATGCAAGGAGGTTATGGTTTCACCAGTGACAACACCATGTGCTCATAACTTCTGCAAGTCCTGTTTGGAAGGTGAATTTGCAGGTCAGGCTTTTGTGAAGGAGAGAAGTAGGGGTGGGAGAACACTTAGGTCCCAAAAAAATGTGATGAAATGTCCTTCTTGTTCTATTGACATTTCTGATTATCTTCAGAACATTCAGGTTGATGTAGATTTGAAGAGTGCGATTGAGTCATTGAAAGCCAAGGTTGAAGAAATTGGAGAATCAGTGGAGTCAAGTGAAGATGCAGATGGGTTACAGGATGATGGTGCTGGCAAGGATGAAGATACTGACTCAGGAAACAAAAATTCTGTAGAGGAGTTGAATGGTCTACCTGAAGGATCTGATGTTGGTGAGCTTAAAGATACCAATAAGGGGCCAGATCCAGCAGTGGAGTGCAATGGAAAGAGAAAGAAAGGTGATTATGGAAATGAATCACCTGATGATAAAATGGAAAAAAGAGATCAAGTGCCTGAAGCTCTTGGCACTCAGAATTACTGGGTTCCTAATAGCTTGTTCTGTGGTGCTGGGAAATTTGAACGGCTACTTCTTACCCTTCTCAGATCATTGAATTACGGCTCCCCTCATTCTTTGACAGTTTTGATCCACGTGCAGCAGCTGCCAATTTCCCATCCACTGCCTCACCTTGTAGTACACCTGGTCTGGCTGGCTACCCTTCTGGGATATGTTGCGTCATCCAAGATCTGTATTGGCTGCGCTTGCTTTAATTTTGCAAGTTCTCAGCAAGTAAGCATGGATCAATCCTATAAGCGGAGCAATGCTGTGTTTGGAGGTGGCGTAGATAGTCTGTTCACAGCCACAATGGCGATGTAG 1170 0.4479 MQAGVLPSSLWVALLDNQSGAHLLFFLVVRLMTRIMEMVSLHWKEEDSRWKWKKPPPPSRQKVQNVEPVEVARAKSAKEVKKFQLKSIKEQLQRGFSCMICKEVMVSPVTTPCAHNFCKSCLEGEFAGQAFVKERSRGGRTLRSQKNVMKCPSCSIDISDYLQNIQVDVDLKSAIESLKAKVEEIGESVESSEDADGLQDDGAGKDEDTDSGNKNSVEELNGLPEGSDVGELKDTNKGPDPAVECNGKRKKGDYGNESPDDKMEKRDQVPEALGTQNYWVPNSLFCGAGKFERLLLTLLRSLNYGSPHSLTVLIHVQQLPISHPLPHLVVHLVWLATLLGYVASSKICIGCACFNFASSQQVSMDQSYKRSNAVFGGGVDSLFTATMAM 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02093 389 MobiDBLite consensus disorder prediction 230 267 - -
Pumo1g02093 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 197 IPR013083 -
Pumo1g02093 389 MobiDBLite consensus disorder prediction 198 214 - -
Pumo1g02093 389 MobiDBLite consensus disorder prediction 185 267 - -
Pumo1g02093 389 FunFam E3 ubiquitin-protein ligase ORTHRUS 3 77 202 - -
Pumo1g02093 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 39 191 IPR045134 -
Pumo1g02093 389 ProSitePatterns Zinc finger RING-type signature. 113 122 IPR017907 -
Pumo1g02093 389 Coils Coil 175 195 - -
Pumo1g02093 389 Pfam RING-type zinc-finger 98 152 IPR027370 -
Pumo1g02093 389 SUPERFAMILY RING/U-box 90 179 - -
Pumo1g02093 389 SMART ring_2 98 154 IPR001841 -
Pumo1g02093 389 ProSiteProfiles Zinc finger RING-type profile. 98 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02093 Pumo-Chr1 45596576 45601521 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02093 37 189 C2H2 Transcription Factor Family AT5G39550 46.405 3.52e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02093 K10638 - gmx:100801535 414.075