Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02075 ATGACGAATTTCCACGTTGTCGAGAAAGATCCAACCTCCAGATACGCTCGGTACGATGAAATGTTGGGGAAAGGAGCCTTCAAGACTGTATACAAAGCTTTTGACGAAGTGGACGGAATCGAAGTTGCGTGGAACAGGATCAGCGTTGAGGACGTTGTGCAGACGCCGCAGCAGTTGGGAAAGTTGTACTCGGAGGTTCACTTGCTCAAGTCCTTGAAACACGAGAATGTCATCAAGTTGTATAATTCTTGGGTCGATGATACCACCGGCACCATCAACATGATCACTGAATTGTTCACCTCTGGGAGTCTGAGGCAGTACCGGAAGAAGCATAAGAATGTGGATATGAAAGCCATCAAGAACTGGGCGCGGCAGATTCTCCGCGGCTTGTGCTTTCTGCACAGTCACAGTCCTCCTATTATTCATAGGGACCTGAAATGTGATAATATTTTTGTCAATGGGAATAGTGGACTGGTTAAGATTGGAGATCTTGGATTGGCAATTGTCATGCAGCAGCCTACTGCTCGCAGTGTCATCGGTACACCAGAGTTCATGGCCCCAGAGCTTTATGATGAGGAATACAATGAACTTGTTGACATATATTCCTTTGGTATGTGCATCTTAGAAATGATCACTTGCGAGTACCCGTACAGTGAATGTAAAAATCCTGCACAGATATATAAGAAAGTTACCTCTGGTATAAAGCCTGCTGCTCTTGCTAAAGTAAATGATCCTGAAGTGAAGCAATTCATAGAGAAGTGTCTAGTTCCAGCATCTATGAGATTGTCGGCATCTGAACTACTGAAAGATCCATTCCTTGCAACTGACAACACAAAGGAGATGAATCATGATACACTGCAGCTGCCTAATCCTCACACCAAATTGGTGAATCCACCAACATGTGAGCCTCATCCCATGGAGATAGATTCTAACTCCAGGCGTACTTCACCTGGCTCCTCCATGGGAAGAATTGAAGAAACTTCTCAAGTTTCAATTTTGATATTGTGA 1008 0.4435 MTNFHVVEKDPTSRYARYDEMLGKGAFKTVYKAFDEVDGIEVAWNRISVEDVVQTPQQLGKLYSEVHLLKSLKHENVIKLYNSWVDDTTGTINMITELFTSGSLRQYRKKHKNVDMKAIKNWARQILRGLCFLHSHSPPIIHRDLKCDNIFVNGNSGLVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYDEEYNELVDIYSFGMCILEMITCEYPYSECKNPAQIYKKVTSGIKPAALAKVNDPEVKQFIEKCLVPASMRLSASELLKDPFLATDNTKEMNHDTLQLPNPHTKLVNPPTCEPHPMEIDSNSRRTSPGSSMGRIEETSQVSILIL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02075 335 MobiDBLite consensus disorder prediction 301 326 - -
Pumo1g02075 335 SMART serkin_6 16 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g02075 335 CDD STKc_WNK 14 273 - -
Pumo1g02075 335 FunFam Probable serine/threonine-protein kinase WNK1 1 97 - -
Pumo1g02075 335 Gene3D Phosphorylase Kinase; domain 1 2 97 - -
Pumo1g02075 335 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 7 277 - -
Pumo1g02075 335 MobiDBLite consensus disorder prediction 310 326 - -
Pumo1g02075 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Pumo1g02075 335 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g02075 335 FunFam probable serine/threonine-protein kinase WNK9 99 278 - -
Pumo1g02075 335 Gene3D Transferase(Phosphotransferase) domain 1 99 281 - -
Pumo1g02075 335 SUPERFAMILY Protein kinase-like (PK-like) 18 316 IPR011009 -
Pumo1g02075 335 ProSiteProfiles Protein kinase domain profile. 16 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02075 Pumo-Chr1 45294850 45296760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02075 1 315 MAP Kinase Kinase Kinase AT5G41990 71.429 2.63e-159 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Pumo1g02075 Pkinase 1.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02075 K08867 - gmx:100272202 647.121