Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02066 ATGGATGGAAAAGGGTTCAGAGCCCCCTTAACCGAAACCGAGAAGGCAGACCTTGAAGCCATTGCTGCACTCAAAGAGTCTTCTGCCTTTGAACTCAAGGAAAAGGGTAACCAATATGTGAAGATGGGTAAGAAGCATTACTCTGATGCCATTGATTGCTACACAAGGGCAATTGATCAGAAAGCCTTGAGTGACTCTGAGACCTCTATTCTTTTTGCAAATAGAGCCCATGTGAATTTGCTGCTAGGGAATCTTAGACGTGCTCTCACAGATTCTCAGGAGGCAATCAAGTGGTGCCCTTCAAATATAAAGGCAATTTATAGAGCTGCCAAAGCTTCTCTTTCACTAAATATGTTGGCAGAAGCAAGAGAGTATTGTCTGAAGGGTCTTCAGTTGGGCCCCAATAATGAGGACTTAAAGAAGCTTGACCGGCAGATTGGTCTGAAGATATCAGAGAAGGAGAAGCATGAGGCTGAAGTCTCCAAGGCTGTTGCAGAGACAAAGGAATGGAGTTTGAACTGTTTTTTTTAG 531 0.4388 MDGKGFRAPLTETEKADLEAIAALKESSAFELKEKGNQYVKMGKKHYSDAIDCYTRAIDQKALSDSETSILFANRAHVNLLLGNLRRALTDSQEAIKWCPSNIKAIYRAAKASLSLNMLAEAREYCLKGLQLGPNNEDLKKLDRQIGLKISEKEKHEAEVSKAVAETKEWSLNCFF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02066 176 Gene3D Tetratricopeptide repeat domain 24 170 IPR011990 GO:0005515
Pumo1g02066 176 Coils Coil 139 159 - -
Pumo1g02066 176 SMART tpr_5 69 102 IPR019734 GO:0005515
Pumo1g02066 176 SMART tpr_5 103 136 IPR019734 GO:0005515
Pumo1g02066 176 SMART tpr_5 29 64 IPR019734 GO:0005515
Pumo1g02066 176 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 12 168 - -
Pumo1g02066 176 SUPERFAMILY TPR-like 19 156 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02066 Pumo-Chr1 45184305 45185014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02066 33 158 Calmodulin-binding Proteins AT3G25230 31.387 5.91e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02066 K24927 - gmx:100783179 293.123