Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02063 ATGGTGAGGTCCGTATCCAAATTCTCTACACTGCTCTCTGTCACACCGATGCTTACACTTGAAGCGGCAAAGGATCCAGAAGGTCTTTTCCCAAGTATACTTGGTCATGAGGCTGCAGGGATTGTGGAAAGTGTTGGAGAAGGTGTTACTGCAGTTCAGCCTGGTGATCATGTCATCCCTTGTTACCAGGCTGAGTGTGGAGAGTGCAAGTTTTGCAAATCAGGCAAAACTAATCTGTGTGGCAAAGTTCGAGCTGCCACTGGGGTAGGGGTCATGCTGAGCGATCGCAAGAGTCGTTTCTCTGTTAATGGAAAACCCCTCTATCATTTTATGGGAACCTCCACATTTAGTCAATACACCGTTGTTCATGATGTTAGTGTAGCTAAGATTGATCCCAAGGCTCCTTTGGAGAAAGTTTGTCTACTTGGATGTGGTGTTCCAACCGGCCTTGGAGCTGTCTGGAACACTGCAAAGGTGGAGCCGGAGTCAATTGTGGCTATTTTTGGCCTTGGAGCTGTTGGGCTTGCTGTTGCAGAGGGTGCAAAAGCTGTTGGTGCATCACGGATTATTGGCATAGATATTGATAGCAATAAGTTTGAAAGAGCAAAGAACTTTGGAGTGACCGAGTTTATTAATCCAAAAGAACATGAGAAACCAATTCAGCAGGTCATAGTTGATCTCACAGATGGTGGAGTTGATTATAGTTTTGAGTGCATTGGAAATGTCTCAGTGATGAGGGCTGCTTTGGAATGCTGCCATAAGGGCTGGGGGATATCAGTTATTGTGGGTGTTGCAGCATCAGGGCAGGAAATATGTACTTGA 822 0.4586 MVRSVSKFSTLLSVTPMLTLEAAKDPEGLFPSILGHEAAGIVESVGEGVTAVQPGDHVIPCYQAECGECKFCKSGKTNLCGKVRAATGVGVMLSDRKSRFSVNGKPLYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVPTGLGAVWNTAKVEPESIVAIFGLGAVGLAVAEGAKAVGASRIIGIDIDSNKFERAKNFGVTEFINPKEHEKPIQQVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGISVIVGVAASGQEICT 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02063 273 Pfam Alcohol dehydrogenase GroES-like domain 24 129 IPR013154 -
Pumo1g02063 273 SUPERFAMILY GroES-like 25 165 IPR011032 -
Pumo1g02063 273 FunFam alcohol dehydrogenase 1-like isoform X1 4 148 - -
Pumo1g02063 273 Gene3D - 24 148 - -
Pumo1g02063 273 FunFam S-(hydroxymethyl)glutathione dehydrogenase 149 273 - -
Pumo1g02063 273 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 135 270 IPR036291 -
Pumo1g02063 273 Gene3D - 149 271 - -
Pumo1g02063 273 PANTHER ALCOHOL DEHYDROGENASE 12 272 - -
Pumo1g02063 273 Pfam Zinc-binding dehydrogenase 172 269 IPR013149 -
Pumo1g02063 273 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 35 49 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02063 Pumo-Chr1 45177637 45180468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02063 30 237 Monolignol Biosynthesis Gene Families AT1G72680 28.302 2.78e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02063 K00121 - gmx:100793008 469.929