Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02050 ATGTTGAGTGCCATGGACACAGGTCGCGAGAAGATGATAGTGACTGTTTCAGACGTCAACTCCAACTTGAAGCGGGGAACGAGGTCTGGCTTCACTTTTTGTGACAACCTTGGTCACTTTCACCGTGTCATTTTAAGCGAAGAGTTTCATACATTTGTCCAGAACGAGCAGATTAAGAAAGGCTCCATTCTTGAACTGCTAGAGTATACGTGCAATGGGTCCTTGCCGATTGTGTTTGTATCCCGTTTAAGCATATTGAATAGTCAATATGCTGAAAGACCCAGATGTCCCATTCGGCCCCCAGCCCATATTCTTCCTATTTCTGCATTGCACATTGGTGTTGTTCAAGGTTGGGTAATCAAAGTCAGGGTAACTGTCAAATCCTATATTACAGATAATGGGCAAACTCGTTCTTTTTTTTTCGATGTCATCGATTCCCAGGGTAGTGAAATAAGATTGGCTGCTTTTGGTAAATCTGTGGAAAGTTTCTATCCTAGGATTCATGAGGATTCAGTGTATCTCATATCTAAAGGTCGGGTTGAAGCTGCTAATAAATTGTATTGCCATTTGGACTGGGAGATCAAATTGAATTTGGAATCAAGAATAGAAAATTGTGCAGAGGATGAACTAATCCCCTACTATCGGTTCTCCTTCCGGCCTGTTGATGGGGTTAACCTTGGTGAGATAGTTGATATAATAGGTAGGGTCAGATTGGTAAGTCCACCTGTTACTGCCAAGATGAATAGAAAGGACACTCCAATAAGAATTGTGAATCTAGAGGATAGTGCGGGTAAAGGAATCAAGTTAGTCCTTTGGAATCAGTATTGTCACAATGAAGGAACAGAAGTGGAAAATCACTTCAAAAATAGAAGTTCTACCCTTATTTTGGCTATAAAATCTGCTAGAGTCAAGGTCTATAATAGGAAAAATGCAATTAATACCATTTCTTCTTCTAGGATTTTCTTAAATCCTGGAATCCCTGAGGCATGGGGATTAATCAAAGGAAAGCAGAAAGTGTCTGCCTCAGCTACAGGACCTAGTGGTGGTGTGCACACAGAAACTTTATGTGAGATAAAAAAATTGAAGCAGTGGGTGCAACAACAGCCCAACAGTGAAGTTCTGATCAAAGTCAAAGCAACACTATCTGATATCAAGAATAAAGATGAAATAGTTTACCCATGTTGCCCGCAGTTATATTTAGATGCAAAGTGCAAACGAAAGGTGGAGTCAGGAAGAGGGGAATGGAGGTGTCCTAGATGTCCTGGATCAATCAGAGATTGTGATTACTGCTATAGGATCGAGGCTGTTATTTCAGACACTGAATCTTCTATCACTGGGTTTGCCTTTGACCAAGTTGGGGAGGCCATCATGCAGATTTCAGCTGATGACCTCCACTGGCTGAAGGATAATAACAGAGATTACCATAGCTATCGAGAAATAGTGAATAAAGCCATTTCGACCTCAACTCAGTTTTTGTTCACCCTGAAGATTAGGAAATATAGCCATAACCGCCAGATGTTGAATATAACAATAGAAGATGTTGAGTACGACCTCAACTGA 1560 0.409 MLSAMDTGREKMIVTVSDVNSNLKRGTRSGFTFCDNLGHFHRVILSEEFHTFVQNEQIKKGSILELLEYTCNGSLPIVFVSRLSILNSQYAERPRCPIRPPAHILPISALHIGVVQGWVIKVRVTVKSYITDNGQTRSFFFDVIDSQGSEIRLAAFGKSVESFYPRIHEDSVYLISKGRVEAANKLYCHLDWEIKLNLESRIENCAEDELIPYYRFSFRPVDGVNLGEIVDIIGRVRLVSPPVTAKMNRKDTPIRIVNLEDSAGKGIKLVLWNQYCHNEGTEVENHFKNRSSTLILAIKSARVKVYNRKNAINTISSSRIFLNPGIPEAWGLIKGKQKVSASATGPSGGVHTETLCEIKKLKQWVQQQPNSEVLIKVKATLSDIKNKDEIVYPCCPQLYLDAKCKRKVESGRGEWRCPRCPGSIRDCDYCYRIEAVISDTESSITGFAFDQVGEAIMQISADDLHWLKDNNRDYHSYREIVNKAISTSTQFLFTLKIRKYSHNRQMLNITIEDVEYDLN 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02050 519 Gene3D - 214 338 IPR012340 -
Pumo1g02050 519 FunFam Replication protein A subunit 103 208 - -
Pumo1g02050 519 SUPERFAMILY Nucleic acid-binding proteins 217 333 IPR012340 -
Pumo1g02050 519 CDD RPA1_DBD_A 106 203 - -
Pumo1g02050 519 Pfam Replication protein A OB domain 223 323 IPR031657 -
Pumo1g02050 519 CDD RPA1_DBD_B 229 332 - -
Pumo1g02050 519 CDD RPA1_DBD_C 357 515 IPR047192 -
Pumo1g02050 519 Gene3D - 339 517 IPR012340 -
Pumo1g02050 519 SUPERFAMILY Nucleic acid-binding proteins 103 208 IPR012340 -
Pumo1g02050 519 SUPERFAMILY Nucleic acid-binding proteins 357 504 IPR012340 -
Pumo1g02050 519 Gene3D - 103 207 IPR012340 -
Pumo1g02050 519 Pfam Replication factor-A C terminal domain 375 513 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02050 Pumo-Chr1 44908562 44910282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02050 101 515 Core DNA Replication Machinery Family AT2G06510 35.011 2.57e-62 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02050 K07466 - jre:109008783 237.654