Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02037 ATGGCAATGACTGAGCCTCTAAGGAATAAGCTCAAGACGCTTTGTGCTGTGGATAGCTGCTCTTACGTCATTTTCTGGCGCATTCATCCTCAAAATTCCTTGTTATTGACTGTGGAAGATGTATATTATGAAGATCAATTGGGAGAAGAGATTGTCAACACAGTTCCACAGGTCCATTTGATGGGCGAAGGAATTGTTGGTCAATCTGCTTTGACTGGCGAGCACAGATGGGTTGACTCAGATGGTCAAATGTGTGAGGATGATTATGGTTTGCATCAACAGTTCTCGTCTGGGATAAAGACAGTCGTGGCGATATCTTTTACACCATGGGGAGTGATACAATTTGGATCCAAAAAGAAGATTTTGGAGAGAGTGAAATTTGTGGAACAAACAGAAAGGTTGCTAAGGGGGATAGAAGATGAGGGTATTCTTGATGTATTAAATAATACAGTTCTATCTCTAGATTCTGAAAATTACGATCTAAATGGATTGTTGGCTTCCATTTCTTCTGAAAATTTATATAATTGGAATCTCAAATCTGTTCATGGTGACCACTCTGAAATGCTATTGGGAAATTCGTGTTCGTCTGCAAGTCTTAATGATTCCTTCCCTTCCATGGATATGATTCTTGAAGAAGGGACGGTACCGATGCATGGATTTTCCTCTCATCTTGGTGACCAATTGGCACCTACAATAGAAGCTCAAGCTGTATTCTCAGATAGGGATAGTACTGATTATTCAATGAACAACTTCATTGCTAGAAATCCCAGTTTTGGCACATGTAGTGGCGAAATTTCCTCAATGGGGCAACAACCGGTTTCTGATGTTGCGGATGTGCACTGTAAAGAAACGAATGCATTTTCTATTAAGAAACTTGCAGTTCAGGATTCAGATTTGACCTCATTATATAGTGTGAATAGACTGTTAAACTCAACAGGCCCATTTCAAGACCACATAGGAAATCCAGTGGATATCCAACATTCTGCTCAGTCTAGTATTGTGACACAAGTTAATTATCCTGATAGTGTCAGTATGATGCATGAGCTCTCCAAGGACTTGGATCCAATTGATACATTAGAAGAATTTTCAAAGTTCTTCTCCATGGATGATCTCTGCCAGTTGTTAGCTCCTTCTCCAGAGCACAGCATTTGTGGAACAGTGACAGCATTGGATGAGTCACAAGAATTTAATCCCACATGTTTTGGTCTGGTTGGTAATAGTGCCATTGATGATGTTCCAGTCACATGTCAAGCTGTGCATAATAGTTCCATCATAGCTACAACCAATTTGGATGGTCAAGAAACATCTACAGTTATGCATAGTTCTGAAAACATTCTCTTGGATAGCTTGAGACATGATTTGAGCTGTCACCAAGTTGAGGAGTGGTGGGGCAGTATGGCTATGCTTACACCAGTGGTGACTGCTGCTGCTACTGACACTGCTTTCTCTGATTGCATGTCAGAGTTGAATGTTGGTACATTAGGTGGCTCTGGGAAGAGATTATTCTCAGAGTTAGGAATTGAAGAGTTTTTGAATGGTTCTAAGTTTGGAGATCAATTATCAACCAATAGAAGGCAGAGGACAGAATATTCACCTGAGAATAGAAATCCAAAGCACTTGGCAAGTCATGCTTTGGTGCAGCCTGTTCCTAAATTGGACATGACAAACAATCTTGTACACAAGAAAGGGATATTCCCAATGTCACAGGTAGGAGTAGGAGGCTTGTGGATAGATGTCAGAAATAGTAATACTGAGAGGGCTGGTTCAGCACATGCAAAGCCTCAAAAGCCAGTGGAACACAATAAGGTCACCAGGAAGAGGGCTAGGCCGGGTGAAACAACTCGACCAAGACCGAAAGATCGTCAGCAGATTCAAGACCGCATTGGAGAGTTGAGAGGGATCATCCCCAGTGGTGGAAAGTGTAGCATTGATTCTTTGTTAGACCGAACCATCAGATACATGATATTCTTACAAAGCATCACCAAGTATGCAGACAAGCTACAAGAACCCAGTGAGCCTAAGCTCATTGAGCAGGCAAATGGAAAGGTTCTAAAAGACAGTGGCGTGGGAGATAGCAAAAAAGGTGGGGGTGGGGTTACATGTGCATTTGAAGTGGAATGTCAAACAATGGCATGCCCAATTATAGTGGAGGACATGGACCCACCTGGCCAAATGCTTATAGAGATGCTTTTTGAAGAGCAGGGTTCCTTCCTTGAGATAGTGGACATCATTGGGGGGTTTGGGCTGAATATCTTGAAGGGAAAGATGGAAATCAGGGAGAATAAAATATGGGCACGCTTTATTGTTGAGGCGAGCAGACATGTAACGAGGATAGATGTATTTTGGTCCCTCATCCGTCTTCTACAGCAGAAAAACACATTTGGAACGGATTCAGCTAATAAGCATTGTAATATTAATGATGTTGGCTTTTCTTCAATGGACAAATACAAGAAAACAGACATGCCAGTACTACCCATGGTCATGACAAAGACACTTAGATGA 2502 0.4173 MAMTEPLRNKLKTLCAVDSCSYVIFWRIHPQNSLLLTVEDVYYEDQLGEEIVNTVPQVHLMGEGIVGQSALTGEHRWVDSDGQMCEDDYGLHQQFSSGIKTVVAISFTPWGVIQFGSKKKILERVKFVEQTERLLRGIEDEGILDVLNNTVLSLDSENYDLNGLLASISSENLYNWNLKSVHGDHSEMLLGNSCSSASLNDSFPSMDMILEEGTVPMHGFSSHLGDQLAPTIEAQAVFSDRDSTDYSMNNFIARNPSFGTCSGEISSMGQQPVSDVADVHCKETNAFSIKKLAVQDSDLTSLYSVNRLLNSTGPFQDHIGNPVDIQHSAQSSIVTQVNYPDSVSMMHELSKDLDPIDTLEEFSKFFSMDDLCQLLAPSPEHSICGTVTALDESQEFNPTCFGLVGNSAIDDVPVTCQAVHNSSIIATTNLDGQETSTVMHSSENILLDSLRHDLSCHQVEEWWGSMAMLTPVVTAAATDTAFSDCMSELNVGTLGGSGKRLFSELGIEEFLNGSKFGDQLSTNRRQRTEYSPENRNPKHLASHALVQPVPKLDMTNNLVHKKGIFPMSQVGVGGLWIDVRNSNTERAGSAHAKPQKPVEHNKVTRKRARPGETTRPRPKDRQQIQDRIGELRGIIPSGGKCSIDSLLDRTIRYMIFLQSITKYADKLQEPSEPKLIEQANGKVLKDSGVGDSKKGGGGVTCAFEVECQTMACPIIVEDMDPPGQMLIEMLFEEQGSFLEIVDIIGGFGLNILKGKMEIRENKIWARFIVEASRHVTRIDVFWSLIRLLQQKNTFGTDSANKHCNINDVGFSSMDKYKKTDMPVLPMVMTKTLR 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02037 833 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 608 657 IPR011598 GO:0046983
Pumo1g02037 833 MobiDBLite consensus disorder prediction 592 623 - -
Pumo1g02037 833 MobiDBLite consensus disorder prediction 516 536 - -
Pumo1g02037 833 MobiDBLite consensus disorder prediction 585 623 - -
Pumo1g02037 833 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 55 133 IPR025610 -
Pumo1g02037 833 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 621 663 IPR036638 GO:0046983
Pumo1g02037 833 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 3 815 IPR043561 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02037 Pumo-Chr1 44830030 44835598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02037 412 798 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 35.840 3.81e-60 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02037 - - pvu:PHAVU_006G000400g 1262.28