Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02017 ATGGACAACGCAGCTGCTGAACTTCAAATTGAGGCAGCAGATCCTGCTCTTCTTCTTCACCATCAGAGTCCTCCAGAAGACCAAGGCTCTCCTCTCTGCAAATACCAGCAAGGTTCCAGTAGAGGACTGCCCCCAAGGCCAAATTCAGCTAGAGTCATCAAATCCACTATGAGAACTTTACTCTCTGAGAGGAGCTTTAAGGCTAAGAATTCTTCACAGGATAGCGAAAGGACAGTTCTGATTGTTCCTGATACCTCACCATCAGATGTTCCTGTGAATAATAAGCCTTCAACTTCAAGGTCCCTCTCTCTTAACAAGATTTTGTTCTCTTCCTCAACGAAAGCACCACATTCATTGCCAGTTACTCCAACTGCAAATTCAGGTGCAGAGAATGTACATGGAAGACATCTAGGGTGTGATTCTGATTTAAGTAAAATGAAAGTAAATCAGCACATGACTCGATCGGTTTCGGTTCCAGTTAATATCAAAGCCGCTAATGCTAATTTAAGGCATTCAGATTCTAGAAGGCTGGTTCGTGTAATTTCAGTAAGATCACTTCCAGGCACTAGTGGTGGCATTTCAGCTCAAAATGCTTCTGGATCAGAGATTGTCAATGAAGATGCTTCTGAGGATATTCCTGAGGAAGATGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGCGGAAGGAGGGAATACTCTTAGGATGGAATGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAGACCTGTGATGTCTGCAAGCAGGAAGTCCAAAACCTTCCAGTAACACTCTTGAAAATTTCTAATCCTCAAACTGTTGCTCGGCAGCCATTGAATGCACGTGAACCGCAACATAGAGAAGTAACTACTTACAGGATATGGCAGGATTTATCAGTACTTATCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTTGAGGAACTACTGGTTTCAGATTTGGGTACTCGTGCTCTTGCCATTTCGTTACCTTTCTCCTGTGTTTTAGGTCTCCTTTCATCTATGATTTCTTCAACCATGGTGAGCGGGAGTTACATGTGGGCTTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGTTTGCTCATGTGTTTTATACTATACTTAATGTTAAAGCCATTCTCTCAGTTCTTCTCTCCTCAGTTCACTGGATTTGGGATTGCAATCAGCTTGAATACTCTGCTAACGGAGTATGTTAG 1254 0.4258 MDNAAAELQIEAADPALLLHHQSPPEDQGSPLCKYQQGSSRGLPPRPNSARVIKSTMRTLLSERSFKAKNSSQDSERTVLIVPDTSPSDVPVNNKPSTSRSLSLNKILFSSSTKAPHSLPVTPTANSGAENVHGRHLGCDSDLSKMKVNQHMTRSVSVPVNIKAANANLRHSDSRRLVRVISVRSLPGTSGGISAQNASGSEIVNEDASEDIPEEDAVCRICLVELAEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVQNLPVTLLKISNPQTVARQPLNAREPQHREVTTYRIWQDLSVLILVSMLAYFCFLEELLVSDLGTRALAISLPFSCVLGLLSSMISSTMVSGSYMWAYACFQFAIVILFAHVFYTILNVKAILSVLLSSVHWIWDCNQLEYSANGVC 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02017 417 MobiDBLite consensus disorder prediction 29 44 - -
Pumo1g02017 417 SMART ringv_2 218 267 IPR011016 GO:0008270
Pumo1g02017 417 MobiDBLite consensus disorder prediction 15 50 - -
Pumo1g02017 417 CDD RING_CH-C4HC3_MARCH 219 267 - -
Pumo1g02017 417 Pfam RING-variant domain 219 266 IPR011016 GO:0008270
Pumo1g02017 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 275 IPR013083 -
Pumo1g02017 417 ProSiteProfiles Zinc finger RING-CH-type profile. 211 273 IPR011016 GO:0008270
Pumo1g02017 417 PANTHER OS02G0165000 PROTEIN 36 400 - -
Pumo1g02017 417 SUPERFAMILY RING/U-box 215 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02017 Pumo-Chr1 44149789 44158507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02017 202 325 C3H Transcription Factor Family AT2G37950 34.109 4.00e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02017 - - gmx:100791140 706.057