Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02005 ATGGGTCGGTGCCGAGCTGCGTCGCGCCCCGGTGACGATGACCCCAACCACAGATCAAAGAGAAAAAGGGCTGCTCTGAATGTAGAAAATTCAGAAACTTTACCTACAGGCCAAGGAGTAACTAATAGCAAGGTATCACTTTATCACTGCAATTATTGTAACAAAGATATTTCGGGGAAGATTCGCATCAAGTGTGTTGTCTGTCAAGATTTTGACCTCTGCATAGAGTGCTTCTCTGTTGGTGCTGAGGTGACCCCTCACAAAAGCAATCATCCATATCGGATTATGGATAATCTAGCTTTTCCACTTATATGTCCAGATTGGAATGCAGATGAAGAGATGTTACTTCTAGAGGGCATTGAAATGTATGGATTTGGGAATTGGAATGAAGTTGCAGAATATGTTGGAACAAAAAGCAAATCTCAATGTATTGACCACTATAATGCTGTATATATGAGTTCGCCATGTTTTCCTCTCCCTGATTTGTCTCATGTTATGGGAAAGAGCAAAGAGGAACTCTTTGCCATGGCGAAGGGACATGAAGCCAAGAAAGAATTTTCTCTAACTGCAGAGCTTACTCTGAAAGAAGAACCTCCCTTCACTGATGGAATAAACTATGAAGAATCGAAGAAGGCAGAAATCAATAATCAAACTATGTCTAGGTTAACCTCAGGTTCAGCATGTGGCAAAGCTTACTCAAGTACAATTAAGAAGGCTTCCAACGTGATGCAAAATAATGATGGGGTTAAGGTGGAAGTAGAGTCTCAAGCAGATCGGAGCATTGGAGAGAAGAAACCTAAATTATCAGGGGAAGATAGGCCTTCTATGACATATTTGAGTGGATACAGTTTTAAGCGAGAGGAATTTGATGTTGAATACGACAATGATGCAGAGCAAGTGTTGGCAGATATGGAATTTAAGGACACTGATACTGGAGCTGAATATGAAATGAAACTGCACGTGCTCCATATCTACTCAAAAAGGTTAGATGAACGGAAGCGCAGAAAGAATTTTATACTTGAAAGAGATTTACTTTATCCTGATCCTTTTGAGAAATCTCTCTTGCCTGAAGAGCTTCAAATTTGTCAGCGTTACAAGGTTTTCATGCGGTTTCACTCAAAAGAAGAGCATCAAGATTTGCTAAAAAATATTATTGAAGAACACAGGCTTGTCAAAAGAATACAAGATTTACAGGAAGCTCGAATTGCTGGCTGTGTAACTGCAGCTGATGCTTATCGATTTATTGAACAAAAAAGAACAAAGGAAGCTGAACCAAGTGCCTGTAAAGATAGTTGTCAGATTGGAACAAGTGCCAAGACATTACAGAGGCCAAATTCTCTCAAAGCAGAAGTTGATAGTAGCCCACGGGGTCTTCAAAAGGGGACTACAGCTATTTTTGCTGGTGCCAAGGATTCACCTACTGCCATACAAGCCATCACAAGGTCGCTAGAAGAGTGGGATATTAGTGGATTTGCAGGGGCTGAATTACTATCTGAATCTGAGAAAAAGCTTTGTAATGAGATCAGAATACTACCCTCACACTATCTCAACATGCTGCAGACCTTGTCATCAGAAATTTCAAAGGGCAGTGTGACCAAGAAATCTGATGCACATACCCTGTTTAAGGTAGAGCCAAGCAAGGTTGATAGAGTCTACGATATGCTTTTGAAAAAAGGAGTTGTGCAGACATAA 1692 0.406 MGRCRAASRPGDDDPNHRSKRKRAALNVENSETLPTGQGVTNSKVSLYHCNYCNKDISGKIRIKCVVCQDFDLCIECFSVGAEVTPHKSNHPYRIMDNLAFPLICPDWNADEEMLLLEGIEMYGFGNWNEVAEYVGTKSKSQCIDHYNAVYMSSPCFPLPDLSHVMGKSKEELFAMAKGHEAKKEFSLTAELTLKEEPPFTDGINYEESKKAEINNQTMSRLTSGSACGKAYSSTIKKASNVMQNNDGVKVEVESQADRSIGEKKPKLSGEDRPSMTYLSGYSFKREEFDVEYDNDAEQVLADMEFKDTDTGAEYEMKLHVLHIYSKRLDERKRRKNFILERDLLYPDPFEKSLLPEELQICQRYKVFMRFHSKEEHQDLLKNIIEEHRLVKRIQDLQEARIAGCVTAADAYRFIEQKRTKEAEPSACKDSCQIGTSAKTLQRPNSLKAEVDSSPRGLQKGTTAIFAGAKDSPTAIQAITRSLEEWDISGFAGAELLSESEKKLCNEIRILPSHYLNMLQTLSSEISKGSVTKKSDAHTLFKVEPSKVDRVYDMLLKKGVVQT 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02005 563 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Pumo1g02005 563 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Pumo1g02005 563 Pfam Zinc finger, ZZ type 48 88 IPR000433 GO:0008270
Pumo1g02005 563 Gene3D - 102 153 - -
Pumo1g02005 563 SMART sant 104 153 IPR001005 -
Pumo1g02005 563 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Pumo1g02005 563 FunFam Transcriptional adapter 2 478 562 - -
Pumo1g02005 563 FunFam Transcriptional adapter 41 96 - -
Pumo1g02005 563 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Pumo1g02005 563 SUPERFAMILY Homeodomain-like 103 153 IPR009057 -
Pumo1g02005 563 FunFam Transcriptional adapter 2 101 153 - -
Pumo1g02005 563 Pfam Myb-like DNA-binding domain 107 148 IPR001005 -
Pumo1g02005 563 SMART zz_5 44 89 IPR000433 GO:0008270
Pumo1g02005 563 ProSiteProfiles SWIRM domain profile. 477 563 IPR007526 GO:0005515
Pumo1g02005 563 CDD ZZ_ADA2 48 96 IPR041983 -
Pumo1g02005 563 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 47 558 - -
Pumo1g02005 563 Gene3D - 41 96 IPR043145 -
Pumo1g02005 563 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Pumo1g02005 563 MobiDBLite consensus disorder prediction 1 23 - -
Pumo1g02005 563 PIRSF Txn_adaptor_ADA2 35 563 IPR016827 GO:0003713|GO:0006357|GO:0035065
Pumo1g02005 563 SUPERFAMILY Homeodomain-like 478 562 IPR009057 -
Pumo1g02005 563 CDD SANT 108 148 IPR001005 -
Pumo1g02005 563 SUPERFAMILY RING/U-box 48 111 - -
Pumo1g02005 563 Gene3D - 477 562 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02005 Pumo-Chr1 43188911 43203894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02005 1 560 EF-hand Containing Proteins AT3G07740 53.671 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo1g02005 Myb_DNA-binding 3.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02005 K11314 - gmx:100779424 1028.08