LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo1g01993	ATGGCAAATCATGGTGCAGTGTCTGAAACCAAGTGTCCATTTGATGTTTTCCTTAGTTTTAGGGGCAAAGATACTCGTCACACATTTACTTGTAAACTCTATGATGCTTTGAGCCGGAAGAGAATTAACACCTTCATGGATAATGAGGAGCTGAAGAATGGAGATCAAATTGGTCCTAGGCTTCTTAAAGCCATTGAAGAATCTAGGATTTCAATTGTTGTTTTATCTGAAAATTATGCAGCCTCTTCATGGTGCCTTGACGAACTTGTCAAGATCCACGAGTGTATGATGTCAAAAAACCAGCTCGTTTGGCCCATCTTTTACAAAGTGGATCCCTCGGATGTGAGGTACCAGAATGGAAGTTATGGTAAGGCCATGACTAAGCATGAAACAAGGTTTGGGAAAGACTCAGAGAAGGTGCACAAATGGAGGTCAACCTTGGAAGAAATAGCCAACTTGAAAGGAGAACATTTGGAACAAGGGAGGGACGAATCCAAGTTTATTGATGATCTTGCTACCAAGATTTTCAATAAAGTATCCCCTAAAGATTTATGTAGCAATGAGCATATAGTTGGACGGGAGTATCGAGTTGAAGAATTGAAATCACTTCTAGATCTTGAGTCTCATAATGTCACTTGCCTGTTGGGGATTCATGGAACTGGTGGAATTGGCAAAACCACACTTGCCAAAGCTTTGTATGACTCCATTTACAAGCAGTTTGAGGGTTCAAGTTTTCTTTCCGACGTAAGAGAAACCTCAAATCAGAAGGGCTTAAAACATTTGCAAGAAGAGCTTCTATCAGACATACTTGAGGACAGCAAAATCCAGTTGAAAAATATTCAAGAAGGAACCAAAACAATAGAAAGTAGACTTGGTTTAAAAAGAGTTCTTATAGTTCTTGACGATGTTGATAACATTGAACAGTTGAAAAAGTTGGCAGGGGGGCGTGATTGGTTTTGTAATGGGAGCAGGATCATTATAACAACAAGAGATAAACATTTGCTAGATCTTGGTAGGGTTGAAAAGAGATATGAAGTGAAACTGCTAAACGACCAAGAGTCTTTGGAGCTCTTTTGTCAGAGTGCCTTTAGAAAAAGTTGTCCTGAACCAAACTATGAAGATTTGTCCAATCGAGCAATGAGTTGTTGCAAAGGCCTTCCATTGGCCTTAGAAGTACTAGGCTCTCATTTGGTTGGAAGAGATTTGGGTGGATGGAAGGATGCATTGGATAGATATGAAAAGAGTCCACATGAAGGTGTCCAAAAGGTTCTTAGAATAAGCTATGATAGCTTGCCCGTCAACGAAAAGAATATTTTTCTCGATGTTGCATGCTTCTTCAAAGGGGAGGGATTGGAATATGTAAAAAGAGTGCTAGATGCGTGTGACTTCGGCTCAGGAGATGGTATTACAACATTAGTTGATAAATCACTTTTAACTGTTGACAACAATTGCTTGGGGATGCATGACCTAATACAAGACACGGGTAGAGAGATTGTTAAGGAGGAAGCGTGGAATGAAGTTGGCAAACGCAGCAGATTATGGCATTATGAAGATGTTCTTCAAGGAAGTAGCGAAATTCAAGGAATAATGCTTGATCCCCCTCAAAGAGAAGAAATTAAGTGTACTAGAACTGTATTTAAGAAGATGAAGAATCTTAGAATTCTCATTGTTCATAACACAAGATTTTTACATAAGCCTCGTTATCTCCCAAATAACTTAAGGCTACTTGATTGGAAGAACTACCCTTCAAAGTCTTTCCCATCAGATTTTTATCCCAGGAATATTGGGGCCTTCAATTTAAGTGGAAGTCCTCTACCCGTACTGATAAAGCCACTTCAGAGATTTGACCATTTGACTTATATGAATATCTCCAGTTGTGATAAAGTTACTGAATTTCCTGATGTGTCTTTAGCAAAGAATTTAAGAAAATTGATACTTGATGAATGCGAGAATCTGGTTAGCATTCATGAATCAGTTGGATATCTCGCTAACCTTATTTTCCTAAGTGCTTCAGAATGCACGCAACTTGAAAGTTTTGTGCCAAGAGTCTATTTGCCATCTCTCGAATACCTTTCCTTCAACTTCTGCAGAAGACTCAAACGCTTCCCAGAGATCATGGGAATGATGGATAAGCCTTTAAAGATTAATATGTTCGGTACAGATATTATAGAGCTTCCAGAATCCATTGAGAAACTTACTGGGCTTAACTATCTTGAGATGACAGGTTGTGAGAGACTCCAACATTTACCGAGTAGCTTATTTATGTTGCCACATTTTGTCACATTAAAAATTGGGGAATGTCGTGGACTTCCAGAGTCATTTAGAAGGTTTAAAGGAAGTGATTCAGCGTGCCCAAAACTAGAGACATTACATTTCGACAATGCTGCGCTATTAGAAAAAGATCTTCACACTATTATTTACAATTTTCCTAGATTGAAAGACTTAAATGTATCGCGGAACGCATTTACATCTCTCCCAACGGGCATTATAGAATCTACTAACTTGGTAAGTCTTGACGTGAGTTTTTGTCGGTGGCTTGAGGCAATTCCAGAACTGCCGTCAAGTGTTCAGAAAGTAGATGCAAGAGAATGCAGATTTTTAACCTGCGAGACATCAGACATCATATGGTCTCAGGTTTACTAG	2643	0.3905	MANHGAVSETKCPFDVFLSFRGKDTRHTFTCKLYDALSRKRINTFMDNEELKNGDQIGPRLLKAIEESRISIVVLSENYAASSWCLDELVKIHECMMSKNQLVWPIFYKVDPSDVRYQNGSYGKAMTKHETRFGKDSEKVHKWRSTLEEIANLKGEHLEQGRDESKFIDDLATKIFNKVSPKDLCSNEHIVGREYRVEELKSLLDLESHNVTCLLGIHGTGGIGKTTLAKALYDSIYKQFEGSSFLSDVRETSNQKGLKHLQEELLSDILEDSKIQLKNIQEGTKTIESRLGLKRVLIVLDDVDNIEQLKKLAGGRDWFCNGSRIIITTRDKHLLDLGRVEKRYEVKLLNDQESLELFCQSAFRKSCPEPNYEDLSNRAMSCCKGLPLALEVLGSHLVGRDLGGWKDALDRYEKSPHEGVQKVLRISYDSLPVNEKNIFLDVACFFKGEGLEYVKRVLDACDFGSGDGITTLVDKSLLTVDNNCLGMHDLIQDTGREIVKEEAWNEVGKRSRLWHYEDVLQGSSEIQGIMLDPPQREEIKCTRTVFKKMKNLRILIVHNTRFLHKPRYLPNNLRLLDWKNYPSKSFPSDFYPRNIGAFNLSGSPLPVLIKPLQRFDHLTYMNISSCDKVTEFPDVSLAKNLRKLILDECENLVSIHESVGYLANLIFLSASECTQLESFVPRVYLPSLEYLSFNFCRRLKRFPEIMGMMDKPLKINMFGTDIIELPESIEKLTGLNYLEMTGCERLQHLPSSLFMLPHFVTLKIGECRGLPESFRRFKGSDSACPKLETLHFDNAALLEKDLHTIIYNFPRLKDLNVSRNAFTSLPTGIIESTNLVSLDVSFCRWLEAIPELPSSVQKVDARECRFLTCETSDIIWSQVY	880

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo1g01993	880	Gene3D	Ribonuclease Inhibitor	715	876	IPR032675	-
	Pumo1g01993	880	Gene3D	Ribonuclease Inhibitor	536	714	IPR032675	-
	Pumo1g01993	880	SUPERFAMILY	"Winged helix" DNA-binding domain	420	521	IPR036390	-
	Pumo1g01993	880	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	186	441	IPR027417	-
	Pumo1g01993	880	SMART	till_3	13	153	IPR000157	GO:0007165
	Pumo1g01993	880	Gene3D	-	178	341	IPR027417	-
	Pumo1g01993	880	SUPERFAMILY	Toll/Interleukin receptor TIR domain	8	155	IPR035897	-
	Pumo1g01993	880	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	15	757	IPR044974	GO:0006952
	Pumo1g01993	880	ProSiteProfiles	TIR domain profile.	12	179	IPR000157	GO:0007165
	Pumo1g01993	880	Gene3D	-	348	432	IPR042197	-
	Pumo1g01993	880	Pfam	TIR domain	14	183	IPR000157	GO:0007165
	Pumo1g01993	880	FunFam	Disease resistance protein (TIR-NBS-LRR class)	10	181	-	-
	Pumo1g01993	880	SUPERFAMILY	L domain-like	530	868	-	-
	Pumo1g01993	880	PRINTS	Disease resistance protein signature	383	397	-	-
	Pumo1g01993	880	PRINTS	Disease resistance protein signature	730	746	-	-
	Pumo1g01993	880	PRINTS	Disease resistance protein signature	290	304	-	-
	Pumo1g01993	880	PRINTS	Disease resistance protein signature	214	229	-	-
	Pumo1g01993	880	Gene3D	-	7	177	IPR035897	-
	Pumo1g01993	880	Pfam	NB-ARC domain	193	430	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo1g01993	Pumo-Chr1	42974655	42978318	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo1g01993	14	778	WRKY Transcription Factor Family	AT4G12020	32.663	1.62e-95	328

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo1g01993	-		-	gmx:100801890	1303.12