Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01989 ATGCATGACCTAATACAAGACATGGGTAGAGAGATTGTTAAGGAGGAAGCGTGGAATGAAGTTGGCGAACGCAGCAGATTATGGCATTATGAAGATGTTCTTCAAGTACTAGCTGATAATAATGGAAGTAGCAAAATTCAAGGAATAATGCTTGATCCCCCTCAAAGTGAAGAAATTGATTGTAGTGATACTGCATTTGAGAAGATGACGAATCTTCGAATTCTCATTGTTCGTAACACAAGCTTTTCACATGAGCCTCGTTATCTCCCAAATAACTTACGGCTACTTGATTGGAAGAACTACCCTTCAAAGTCTTTCCCATCAGATTTTCATCCCAGGAAAATTGGGGCCTTCAATTTAAGTGGAAGTCCTCTACTCGTATTGGAAAAGCCATTTCAGATATTTGACCATTTGACTTACATGAATATCTCCGGTTGTGGTAAGGTTACTGAATTTCCTGATGTGTCTGGAGCCAAGAATTTAAGAGAATTGATACTAGATGGATGCGAGAACCTGGTTAGCATTCATGAATCAGTTGGATATCTCGCTAACCTTGTTTCCCTAAGCGCTTCAGAATGCATGCAACTTGAAAGTTTTGTGCCAACAATCTATTTGCCATCTCTCAAATCCCTTTCCTTTGTCCTCTGCGCAAGACTTGCACACTTCCCAGAGATCGGGGGAATGATGGATAAGCCATTAGAGATTATTATGTCATATACAGCTATTCAAAAGCTTCCAGAATCCATTGAGAAACTTACTGGGCTTAACTATCTTGAGATGACAGGTTGTGGGGAACTCCGACATTTACCAAGTAGCTTATTTAAGCTGCCAAATTTGGTCACATTAAAACTTGCGGAATGTGACGGACTTCCAAGGTTATTGAGAATGTTTATAGGAAGTCAATCAAGGTGCACAATAGTAGAGACATTACATTTCGACAATACTGGGCTGAGAGACCTTGATCTTGAGACTATTATTGACATTTTTCCTAACTTGAAAGACTTAAATGTATCGCGGAACAGATTTGTTGGTCTCCCATCGAGCATTGAAAAATCTACTAACTTGACAAGTCTTGACGTGAGTTATTGTTTGAAGCTTCAAGGCATTCCATTTAGCCTGCCATCAAGTGTTCAAAAAGTAAATGCAAGAGAATGCCAATCCTTAGATCACCTATCATCACACGCCTTATGGATTCAGGTATGTCAAGAGAAGAAGGGATTAGAAGTCATCATGCCGCCGAAAAGGGAGATTCCAAGATGGTTCAACCATGTTAAGAAGGGACATTTTCCAGATTTCAAGGCTCGTGGGAAGTTCCCTGCGGTTGCTATAGCGTTTATGTTCGGGAAAGTGAATGCAAAAGATAATAGAAGTATAGATGTTGGCCTGCACTTGTTGATTGATAATGAAAGGAGAAAGTTCCGTAATATCTCTGTCCCTGAGAATCACGTGTTGTTGTGTGAACTAGGAGGTTTGTTCAGTTTGGAGGAGTGGGAGGATGTGGGTCTTGCAATTGGTAATGATTGGAAGGCCATACATGTTGACTGTGAAACAGAGTTGCCTCTATGTTCATGGGGAGTTTATGTGTACAAGAGTCAGACTAAGAAGGAAGATATCCAATTCACGTGA 1626 0.4041 MHDLIQDMGREIVKEEAWNEVGERSRLWHYEDVLQVLADNNGSSKIQGIMLDPPQSEEIDCSDTAFEKMTNLRILIVRNTSFSHEPRYLPNNLRLLDWKNYPSKSFPSDFHPRKIGAFNLSGSPLLVLEKPFQIFDHLTYMNISGCGKVTEFPDVSGAKNLRELILDGCENLVSIHESVGYLANLVSLSASECMQLESFVPTIYLPSLKSLSFVLCARLAHFPEIGGMMDKPLEIIMSYTAIQKLPESIEKLTGLNYLEMTGCGELRHLPSSLFKLPNLVTLKLAECDGLPRLLRMFIGSQSRCTIVETLHFDNTGLRDLDLETIIDIFPNLKDLNVSRNRFVGLPSSIEKSTNLTSLDVSYCLKLQGIPFSLPSSVQKVNARECQSLDHLSSHALWIQVCQEKKGLEVIMPPKREIPRWFNHVKKGHFPDFKARGKFPAVAIAFMFGKVNAKDNRSIDVGLHLLIDNERRKFRNISVPENHVLLCELGGLFSLEEWEDVGLAIGNDWKAIHVDCETELPLCSWGVYVYKSQTKKEDIQFT 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01989 541 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 231 385 IPR044974 GO:0006952
Pumo1g01989 541 SUPERFAMILY L domain-like 1 387 - -
Pumo1g01989 541 Gene3D Ribonuclease Inhibitor 233 425 IPR032675 -
Pumo1g01989 541 Gene3D Ribonuclease Inhibitor 8 232 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01989 Pumo-Chr1 42846962 42877828 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01989 1 320 WRKY Transcription Factor Family AT4G12020 34.524 6.14e-42 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01989 - - gsj:114401341 840.491