Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01988 ATGGCAAATCATGGTGCAGTGTCTGAAACCAAGTGTACCTATGATGTTTTCCTTAGTTTTAGGGGTGAAGATACCCGTCACACATTTACTTGTAAACTCTATGATGCTTTGCTCCAGAAGAAAATTGGAACCTTCATGGATAATACGGAGCTGAAGAATGGAGATCAAATTGGTCCTACTCTCTATAAAGCCATTGAAGAATCAAGGATTTCAGTTGTTGTTTTGTCTGAAAATTATGCAGGCTCTTCATGGTGCCTCGATGAACTTGTCAAGATCCACGAGTGTATGAAGTCAAAAAACCAGCTCGTTTGGCCCATCTTCTACAAAGTGGATCCCTCGGTTGTGAGGTATCAGAATGGAAGTTATGGTGAGGCCATTACTAAGCATGAAAGAAGGCCTGGGATAGACTTGGAGAAGGTGCACAAATGGAGGTCAACCTTGAAAGACATAGCCAACTTGAAAGGAGAACATTTGGAACAAGGGAGGGACGAATCCAAGTTTATTGATGATCTTGCTACCAAGATTTTCAATAAAGTATCCCCTAAAGATTTATCTAGCAATGAGCATATAGTTGGACGGGAGTATCGAGTTGAAGAATTGAAATCACTTCTAGATCTTGAGTCTCATAATGTCACTTGCCAGTTGGGGATTCATGGAACTGGTGGAATTGGCAAAACCACACTTGCCAAAGCTTTGTATGACTCCATTTACAAGCAGTTTGAGGGTTCAAGTTTTCTTTTCAACGTTAGAGAAACCTCAAATCAGAAGGGCTTAGAACATCTGCAAGAAAGGCTTCTAAAACAGATACTTGAGGACAGCAAAATCCAGTTGGAAAGTATTGAAGAAGGAACCAGAACCATAAAAAGTAGACTTGGTTTAAAAAGAGTTCTTATAGTTCTCGATGATGTTGATGACATTAAACAGTTGGAAAATTTGGCAGGGAAATGTGATTGGTTTGGTCCTGGGAGCAGGATTATCATAACAACAAGAGATAAACATTTGCTAGATCTTGGTAGGGTTGAAAAGAGATATGAAGTGAAAGTGCTAGACGACAAAGAGTCTCTAGAGCTCTTTTGTCAAAGTGCCTTTGGAAAAAGTTGTCCTAAATCAAACTATGAAGATCTGTCCAATCGAGCAATGAGTTGTTGCAAAGGCCTTCCATTGGCCTTAGAAGTACTAGGCTGTCATTTGGTTGGAAAAAAATTGGGTGGATGGAAGGATGCATTGGAAAGATATGAAAAGAGTCCACATGAAGATGTTCAAAAAGTTCTTAGAATAAGCTATGATAGCCTGCACCGCAATGAGAAGAATATTTTTCTGGATGTTGCATGCTTCTTCAAAGGGGAGGGATTGGAATATGTAAAAGAGTGCTAG 1374 0.3974 MANHGAVSETKCTYDVFLSFRGEDTRHTFTCKLYDALLQKKIGTFMDNTELKNGDQIGPTLYKAIEESRISVVVLSENYAGSSWCLDELVKIHECMKSKNQLVWPIFYKVDPSVVRYQNGSYGEAITKHERRPGIDLEKVHKWRSTLKDIANLKGEHLEQGRDESKFIDDLATKIFNKVSPKDLSSNEHIVGREYRVEELKSLLDLESHNVTCQLGIHGTGGIGKTTLAKALYDSIYKQFEGSSFLFNVRETSNQKGLEHLQERLLKQILEDSKIQLESIEEGTRTIKSRLGLKRVLIVLDDVDDIKQLENLAGKCDWFGPGSRIIITTRDKHLLDLGRVEKRYEVKVLDDKESLELFCQSAFGKSCPKSNYEDLSNRAMSCCKGLPLALEVLGCHLVGKKLGGWKDALERYEKSPHEDVQKVLRISYDSLHRNEKNIFLDVACFFKGEGLEYVKEC 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01988 457 PRINTS Disease resistance protein signature 383 397 - -
Pumo1g01988 457 PRINTS Disease resistance protein signature 290 304 - -
Pumo1g01988 457 PRINTS Disease resistance protein signature 214 229 - -
Pumo1g01988 457 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Pumo1g01988 457 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 181 - -
Pumo1g01988 457 SMART till_3 13 153 IPR000157 GO:0007165
Pumo1g01988 457 Gene3D - 348 432 IPR042197 -
Pumo1g01988 457 Pfam NB-ARC domain 193 432 IPR002182 GO:0043531
Pumo1g01988 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 441 IPR027417 -
Pumo1g01988 457 Pfam TIR domain 14 186 IPR000157 GO:0007165
Pumo1g01988 457 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 155 IPR035897 -
Pumo1g01988 457 Gene3D - 177 341 IPR027417 -
Pumo1g01988 457 Gene3D - 11 176 IPR035897 -
Pumo1g01988 457 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 447 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01988 Pumo-Chr1 42844890 42846878 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01988 14 446 WRKY Transcription Factor Family AT4G12020 28.111 2.57e-44 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01988 - - gsj:114401341 710.679