Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01984 ATGGGCCTGTCAAGTCTCCCAGCACCATCTGAAGGAGTGTTGTGTGTGCTTCTTGTAAACACTGCCTTGTCTATATCCATATTCAAAGGCATCATTAGGACAATTCTACACATTGTTGGTATCCATGTTTCATCATCTCCTTCACCAGACATCTCCCAGAACCCAAATGAGTCATTTGAATTCCACCACCACCTCAGCCCCTCAGAGGGTTTCATTGAAGAGTTCAGAAGCAGGACACCAACACTCAGGTTTGGCAGCATGTGTGGTGGCTGTAATAAACAACCTCAACATGAATGCTGTTGTGTGTGTCTCACAAAGTTTGAGCCAGAATCTGAGGTAAACTGTTTATCTTGTGGCCATCTTTTTCATAAAGTGTGCTTGGAGAAATGGTTGGACTTTTCGAACATTACATGCCCACTTTGCAGGACTCCCTTGATGCCTCAAGATGATGCATCTTGCTTTTGGTAA 468 0.4402 MGLSSLPAPSEGVLCVLLVNTALSISIFKGIIRTILHIVGIHVSSSPSPDISQNPNESFEFHHHLSPSEGFIEEFRSRTPTLRFGSMCGGCNKQPQHECCCVCLTKFEPESEVNCLSCGHLFHKVCLEKWLDFSNITCPLCRTPLMPQDDASCFW 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01984 155 SMART ring_2 100 141 IPR001841 -
Pumo1g01984 155 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Pumo1g01984 155 SUPERFAMILY RING/U-box 95 148 - -
Pumo1g01984 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 151 IPR013083 -
Pumo1g01984 155 PANTHER - 1 150 IPR044249 -
Pumo1g01984 155 ProSitePatterns Zinc finger PHD-type signature. 88 141 IPR019786 -
Pumo1g01984 155 Pfam Ring finger domain 100 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01984 Pumo-Chr1 42763085 42764772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01984 1 149 C3H Transcription Factor Family AT2G04240 58.974 6.72e-52 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01984 K16285 - gmx:100306440 279.256