Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo1g01984 | ATGGGCCTGTCAAGTCTCCCAGCACCATCTGAAGGAGTGTTGTGTGTGCTTCTTGTAAACACTGCCTTGTCTATATCCATATTCAAAGGCATCATTAGGACAATTCTACACATTGTTGGTATCCATGTTTCATCATCTCCTTCACCAGACATCTCCCAGAACCCAAATGAGTCATTTGAATTCCACCACCACCTCAGCCCCTCAGAGGGTTTCATTGAAGAGTTCAGAAGCAGGACACCAACACTCAGGTTTGGCAGCATGTGTGGTGGCTGTAATAAACAACCTCAACATGAATGCTGTTGTGTGTGTCTCACAAAGTTTGAGCCAGAATCTGAGGTAAACTGTTTATCTTGTGGCCATCTTTTTCATAAAGTGTGCTTGGAGAAATGGTTGGACTTTTCGAACATTACATGCCCACTTTGCAGGACTCCCTTGATGCCTCAAGATGATGCATCTTGCTTTTGGTAA | 468 | 0.4402 | MGLSSLPAPSEGVLCVLLVNTALSISIFKGIIRTILHIVGIHVSSSPSPDISQNPNESFEFHHHLSPSEGFIEEFRSRTPTLRFGSMCGGCNKQPQHECCCVCLTKFEPESEVNCLSCGHLFHKVCLEKWLDFSNITCPLCRTPLMPQDDASCFW | 155 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo1g01984 | 155 | SMART | ring_2 | 100 | 141 | IPR001841 | - | |
Pumo1g01984 | 155 | ProSiteProfiles | Zinc finger RING-type profile. | 100 | 142 | IPR001841 | - | |
Pumo1g01984 | 155 | SUPERFAMILY | RING/U-box | 95 | 148 | - | - | |
Pumo1g01984 | 155 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 77 | 151 | IPR013083 | - | |
Pumo1g01984 | 155 | PANTHER | - | 1 | 150 | IPR044249 | - | |
Pumo1g01984 | 155 | ProSitePatterns | Zinc finger PHD-type signature. | 88 | 141 | IPR019786 | - | |
Pumo1g01984 | 155 | Pfam | Ring finger domain | 100 | 142 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo1g01984 | Pumo-Chr1 | 42763085 | 42764772 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo1g01984 | 1 | 149 | C3H Transcription Factor Family | AT2G04240 | 58.974 | 6.72e-52 | 160 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo1g01984 | K16285 | - | gmx:100306440 | 279.256 |