Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01983 ATGGGTTATATATGTGATTTTTGTGGAGACCAGAGATCCATGGTGTACTGCCGATCTGATGCTGCATGCTTATGTTTGTCTTGTGATCGGAATGTTCATTCTGCTAATGCCCTTTCTAGGCGTCATTCACGGACCCTTTTATGTGAGAGATGCAATTCACAACCTGCCTTTGTAAGGTGTGTTGAAGAGAAAATTTCACTTTGTCAGAATTGTGACTGGTTGTGTCATGGCACCTCTGCATCTTCTTCAACACATAAGAGACAAGCAATCAATTGCTACTCTGGCTGCCCTTCAGCGGCGGAACTGTCCTCAATATGGTCATTTGTGTTAGATATCGCTGCCATAAGTGAATCTACATGTGAGCAAGAACTAGGCTTAATGAGTATTAATGAGAACAAGAGTGTTGGGGTTCCTCCAGAAGACCAGAATGTGTCTGGTTCAGATGAAGTTACTGATCTACCTGCTTTGGACAAGTCTTTGGTTGGTACATCTTCAATGCCTGAATCAAGCTCCGAACCTCGTATTCTGGACCAGCCAGCTGGACCTGCCAATGAATGTCTGCCAAAGTTATACTGTCCTGCTACAAAATGCCCTGCTTTATGTGAAGATTATGATAATCTGTATGATGATTTCAACATGGATGAAGTGGATCTAAATCTTGAGAACTATGAAGAACTTTTTGGTGTGGCCCTCAGTCATTCTGAAGAGCTATTTGAAAATGGTGGAATTGATAGCTTGTTTGGGACAAAAGACATGTCTGCTGGAGATTCCAATTGTCAGGATGCTATTGCTGCTGAGGGGTCATCAGTTGGACTGGTCAATGCAATGCAATCAGGCGTGCAGCAATGCAGCATCTGCAGATTCCATTTTGAGTACTAA 879 0.4289 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPAFVRCVEEKISLCQNCDWLCHGTSASSSTHKRQAINCYSGCPSAAELSSIWSFVLDIAAISESTCEQELGLMSINENKSVGVPPEDQNVSGSDEVTDLPALDKSLVGTSSMPESSSEPRILDQPAGPANECLPKLYCPATKCPALCEDYDNLYDDFNMDEVDLNLENYEELFGVALSHSEELFENGGIDSLFGTKDMSAGDSNCQDAIAAEGSSVGLVNAMQSGVQQCSICRFHFEY 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01983 292 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 265 - -
Pumo1g01983 292 SMART bboxneu5 48 90 IPR000315 GO:0008270
Pumo1g01983 292 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pumo1g01983 292 CDD Bbox1_BBX-like 4 47 - -
Pumo1g01983 292 CDD Bbox1_BBX-like 47 90 - -
Pumo1g01983 292 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Pumo1g01983 292 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01983 Pumo-Chr1 42727691 42734506 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01983 1 247 C2C2-CO-like Transcription Factor Family AT3G07650 55.859 4.81e-89 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01983 - - gmx:100796748 533.102