Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01982 ATGGCTTCCAGAAAATCCGACAACCCTCACTCCGGCGACGGCGCCAGTCCAGGGAAAATCTTCATCGGAGGGTTAGCCAAAGACACAACCCTAGAGACGTTCTTGAAGTACTTTGAGAGGTACGGCGAGATAACGGACTCCGTTATCATGAAGGACCGTCACACGGGTCGGCCCAGGGGCTTTGGTTTCATCACCTACGCCGATCCCTCCGTCGTTGATCAAGTCATTCAGGAGAACCACGTCATCAACGGCAAACAGGTGGAGATTAAGAGGACCATTCCCAAGGGCTCGTCGCAGGCTAATGACTTCAAAACCAAGAAGATTTTCGTCGGCGGTATTCCAACGGCAGTATCTGAAGATGAGCTCAAGAACTTCTTCTCTAAGTATGGGAAGGTGGTGGAGCATGAGATTATACGGGACCACACCACAAAGCGATCCCGGGGTTTTGGCTTTATAGTTTTCGATAGTGAAAAGGTTGTGGATAATCTGTTGGTGGATGGGAACATGATTGATATGGCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACCCAGCTTCTCTTCCTGCATTTGCTAGTGACTCTAGGGCACGTTCTTACAATGATGGTTTTGGTGGATTTGGCGATTCTTATGGAAGTTTTGGTGGTAGCGGGTATGGTCCTGGTTCTTATAGGTCACTTGGAGGTTTTGGGGCTAGGCTTGGTGATTATGGTGGGTATGGGGCTGGAGATGACTTTGGTGGTAGTTTTGGGGGTTATGGTGGCAGGTGGTGCTGGTAG 795 0.4943 MASRKSDNPHSGDGASPGKIFIGGLAKDTTLETFLKYFERYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDQVIQENHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTAVSEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKVVDNLLVDGNMIDMAGTQVEIKKAEPKKSSNPASLPAFASDSRARSYNDGFGGFGDSYGSFGGSGYGPGSYRSLGGFGARLGDYGGYGAGDDFGGSFGGYGGRWCW 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01982 264 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Pumo1g01982 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 161 IPR000504 GO:0003723
Pumo1g01982 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 86 IPR000504 GO:0003723
Pumo1g01982 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Pumo1g01982 264 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 224 - -
Pumo1g01982 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Pumo1g01982 264 Gene3D - 18 96 IPR012677 -
Pumo1g01982 264 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Pumo1g01982 264 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 7 257 - -
Pumo1g01982 264 Gene3D - 97 218 IPR012677 -
Pumo1g01982 264 SMART rrm1_1 19 90 IPR000504 GO:0003723
Pumo1g01982 264 SMART rrm1_1 107 180 IPR000504 GO:0003723
Pumo1g01982 264 SUPERFAMILY RNA-binding domain, RBD 94 190 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01982 Pumo-Chr1 42696153 42698115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01982 4 193 Eukaryotic Initiation Factors Gene Family AT1G71770 23.333 2.18e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01982 K12741 - gmx:100801373 413.305