Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01980 ATGTCGAAACGAATATGGAGCCGCGAAGACGAGAAAGAGATCTTGAAAGCGTTGGCAGACTTCGTTGACGAGACCGGCTTGATGCCTTACAAAGATGTCCACGCATTCAATGATTTCCTCAAAAAATCAAAGCCCCAATGCGTCGAGATCTCGACTCGCCAACTGAAGGGGAAGATTCGCAGGATGATGAAGAAGTTCGTGAAGAGCAAGAGCATGTTCAAGTTCGATTTCGAGACCATTCAGCTGGCCCACAAGGTTTGGGCTGCTGCTGCTAGGCCCGTCGCTGAGGAGGAGAAGAAGGTTTTGGAATGTGAGTGTGAATGCGAGAAGATGTTTGCTCATGTCAAAGATGGCGGTGAAGTGGAAGAAGCTGCTGCGCTTCCCTCAGATGGAACTGTTGCCAAAAGAATGGAACCCGTTAGTGAACAGACTTTGGCCATCATGGAGCCTCTTGAAATGATTTAA 465 0.4839 MSKRIWSREDEKEILKALADFVDETGLMPYKDVHAFNDFLKKSKPQCVEISTRQLKGKIRRMMKKFVKSKSMFKFDFETIQLAHKVWAAAARPVAEEEKKVLECECECEKMFAHVKDGGEVEEAAALPSDGTVAKRMEPVSEQTLAIMEPLEMI 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01980 154 Pfam Protein of unknown function, DUF573 3 72 IPR007592 GO:0006355
Pumo1g01980 154 PANTHER BNAANNG10740D PROTEIN-RELATED 3 105 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01980 Pumo-Chr1 42674281 42690354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01980 3 67 GeBP Transcription Factor Family AT1G61730 46.154 3.59e-12 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Pumo1g01980 DUF573 7.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01980 - K13093 thj:104808501 46.9802