Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01965 ATGCCTCGTGGTGCAACAAGGTCCGGACACGATGGGGCTCTCACCCTCTCTGGCACCCCCTTCCAGGGGACCTGGGCCAGGTCCGCAATTGAGGAAGCTTCTCCAGACTACAATTCAGACACCAAAGGCGACCAATTCTCATGGTGGGCTCTTCCCGGTTCGCACACCATTACTAGGGGAATCCTTGTTAGTTTCTTTTCCTCCCCTTATTGTCGAATCCGGTCGAAAGCAGGGCAAGCAAGCACTGACTGCAAGTCTGCAAATAAATTAAAAGCCCTTTTGCTGCATCCATCCATCTATCTAGCAATTGAGTTGGGTTACAGAAAGGCGATGATGACATTGGTTGACGAGCTGGAGACATTGGTTGACGAGTTGGAGGCATCGGACTTTGCGGCGTCGGTGCCGGTGAAGAAGGTCCCATACGGCGACGTATTCGAGGCGTCCCGCGCCGGCGACGTGGAGAGGCTCCGTTACCTGCTGGAGGCTGGCGTGAACGTGAACGCGCGGGACCAGTGGGACTCCGTGGCCCTCTACTACGCCTGCCTCGCCGGCCACCTCGACGCCGCCCGCATGCTCCTCGAGAACGGTGCCATCTGCTCCGAACACACCTTCGACGGCGACCGCTGCCACTACGCCGCCCTCAATTTGAAGGTCCGCAAACTCCTCAAGGCCTTCGAGGCCCGCCCCCCTCCCTTGGACCCCTTGCAGGCCGCCTTGCGCGACACCTTCCTCGCCGCCTGTATTTCATCCACTCAGGGCTCCATTTCCAGCTACTTCCCTCCGGATGTAGTTTTTATTGTACAAGGAAGACCTATTCAAGCTCACAGAGTCATATTAAGCGTGAGGTCACCATTTTTCAAGAAAAAGTTTACAACTGATTGGAAGGAGCGCAGTGAAGTTAGATTCTCAAGGGAAAGGCTGTCATATCCTGCACTTTATAGCCTTGTACACTTCTTTTATTCGGACAGATTAGAGATTGCTGTTGATGACATGGAGGACCTTGTGAGAATCTGCAAAGTATGCAGATGTGAATCACTGCATAAAGTTCTTGAGAAAGAAGTGATTCATCAAAAATATGCAGATTATAAAGCACTGAGAGATGTAGATAGTTCTCAGAAACGGTATATTTTACAAGGTCTATCCCTTCCTGAAGAAGACAGGCTTCCTGCAGCCTTGCATCGAATCCTTCTGACTGCCCTTTCAAATTCAACCCATGAAAGTGGTCAAGAAGATGAAATTGATAAACTGGTATCTAGGATGGGTGCCTTGCAGATGGCTAAATCTCTGGATGATCTTGCTGATGTTTGTGTAAAAGTTGATAGAAAAATTTTCCGCTGTCACCAAGTTATCCTAGCATCTAGGTCAGAATATTTCAAAGCAAGATTATCACATATGAAGGACTTCCATGAAGGCAAAGATGAGTTATTTGTTGACATCCTTCCTTGTCTTGAAGAACATGACTTGAGCATGGATGCTTTTGAGAAAATGATTGAGTACATGTACACTGATCGTTTGCAGGATATAAATCCAGATCAGGCTGAGGAAATGTTGGATGTTGCTTCTAGATACTTATTGTTTCCTCTCAAGCGGGCAGTAGCTGATGTCTTGTTGCCACACTTGGAAATGGTGTCACCTGAAGAACTTTGCCATTGGTTAATACTAGCAGACATGTATGGTGTTGTCAAGATTCGGGAATATTGTCTAGACACCATTGCTTGTAATTTCGAAACATTTGCTGATACTAAAGAATTCCGGGCAATGCTCTTGACTTTGCCTCCACCATCTGGAGACTCGTCTCTTCGTACCACTGTCCCGAGTATTCCTGGATCTGCTCTTAAGACTGATCAAGGAAATCTTCTTGATGATTTACGTGAGAAATGGCTTGAAATTGAAGCCGCTGAGCTTGACAAGAGAGATGAGAGTGCTTTGCAATTTGACAAGCGTCTAGAGATGCTTATGCTTGTTGCAGAGCAGGAAAAATCATCAGACAATGCTGATTTAGATGGCATCAATGACACCCTTGCCTTTCCTCCCAATCACCTCTCTGATTTAAGTGATACCATCCTCAACACAAAATTTCCTATCACTACATGA 2094 0.4728 MPRGATRSGHDGALTLSGTPFQGTWARSAIEEASPDYNSDTKGDQFSWWALPGSHTITRGILVSFFSSPYCRIRSKAGQASTDCKSANKLKALLLHPSIYLAIELGYRKAMMTLVDELETLVDELEASDFAASVPVKKVPYGDVFEASRAGDVERLRYLLEAGVNVNARDQWDSVALYYACLAGHLDAARMLLENGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLDPLQAALRDTFLAACISSTQGSISSYFPPDVVFIVQGRPIQAHRVILSVRSPFFKKKFTTDWKERSEVRFSRERLSYPALYSLVHFFYSDRLEIAVDDMEDLVRICKVCRCESLHKVLEKEVIHQKYADYKALRDVDSSQKRYILQGLSLPEEDRLPAALHRILLTALSNSTHESGQEDEIDKLVSRMGALQMAKSLDDLADVCVKVDRKIFRCHQVILASRSEYFKARLSHMKDFHEGKDELFVDILPCLEEHDLSMDAFEKMIEYMYTDRLQDINPDQAEEMLDVASRYLLFPLKRAVADVLLPHLEMVSPEELCHWLILADMYGVVKIREYCLDTIACNFETFADTKEFRAMLLTLPPPSGDSSLRTTVPSIPGSALKTDQGNLLDDLREKWLEIEAAELDKRDESALQFDKRLEMLMLVAEQEKSSDNADLDGINDTLAFPPNHLSDLSDTILNTKFPITT 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01965 697 MobiDBLite consensus disorder prediction 1 20 - -
Pumo1g01965 697 FunFam Ankyrin repeat and BTB/POZ domain-containing protein 1 414 542 - -
Pumo1g01965 697 Gene3D Potassium Channel Kv1.1; Chain A 254 354 IPR011333 -
Pumo1g01965 697 FunFam BTB/POZ domain-containing protein 138 256 - -
Pumo1g01965 697 Coils Coil 108 128 - -
Pumo1g01965 697 Gene3D Potassium Channel Kv1.1; Chain A 401 572 IPR011333 -
Pumo1g01965 697 FunFam BTB/POZ domain-containing protein 255 377 - -
Pumo1g01965 697 Gene3D - 83 253 IPR036770 -
Pumo1g01965 697 SUPERFAMILY POZ domain 257 353 IPR011333 -
Pumo1g01965 697 SUPERFAMILY POZ domain 425 539 IPR011333 -
Pumo1g01965 697 ProSiteProfiles Ankyrin repeat profile. 147 171 IPR002110 GO:0005515
Pumo1g01965 697 Pfam BTB/POZ domain 261 357 IPR000210 GO:0005515
Pumo1g01965 697 Pfam BTB/POZ domain 429 536 IPR000210 GO:0005515
Pumo1g01965 697 SUPERFAMILY Ankyrin repeat 146 223 IPR036770 -
Pumo1g01965 697 ProSiteProfiles BTB domain profile. 261 328 IPR000210 GO:0005515
Pumo1g01965 697 ProSiteProfiles BTB domain profile. 433 509 IPR000210 GO:0005515
Pumo1g01965 697 SMART BTB_4 433 540 IPR000210 GO:0005515
Pumo1g01965 697 SMART BTB_4 261 358 IPR000210 GO:0005515
Pumo1g01965 697 CDD BACK 544 587 - -
Pumo1g01965 697 CDD BTB_POZ_ZBTB_KLHL-like 432 523 - -
Pumo1g01965 697 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 121 656 IPR044515 -
Pumo1g01965 697 Pfam Ankyrin repeats (many copies) 146 193 IPR002110 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pumo1g01965 BTB 9.8e-16 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01965 K10520 - gmx:100812009 1046.57