Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01956 ATGGCTGCTTGTATGCGCTGTGAAACGCAGCATCAGGAAGTTGTGCAGCGAAACAGAAAGGTTTCCATGAGAACATTGTGGTCTACTATTCTTCATGGTTTGAAGATGAACAACTGTATATTCAGATGGAGCTATGTTGCCAGTGCATTGCAATTTATCCATGAGAGGGGAATAGCTCATCTTGATGTTAAGCCTGAAAATATTTATGTGAAAAATGGTGTTTACAAGCTTGGTGATTTTGGGTGTGCAACTCTACTTGATAATAGCCTGCCAATTGAGGAGGGTGATGCGCGTTATATGCCTCAAGAAATCCTCAATGAGAATCATGATCACCTTGACGAGGTTGATATCTTCTCCCTGGGAGCTTCTATGTTTGAGCTAATTTGCAGGTCGAGTTTGCCAGAATCAGAAACTCAGTCCTTTAATCTTAAGGAAAGTTGCCACTCTTGCCAGGAGTTTCAGTGA 465 0.4194 MAACMRCETQHQEVVQRNRKVSMRTLWSTILHGLKMNNCIFRWSYVASALQFIHERGIAHLDVKPENIYVKNGVYKLGDFGCATLLDNSLPIEEGDARYMPQEILNENHDHLDEVDIFSLGASMFELICRSSLPESETQSFNLKESCHSCQEFQ 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01956 154 SUPERFAMILY Protein kinase-like (PK-like) 31 138 IPR011009 -
Pumo1g01956 154 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 46 144 - -
Pumo1g01956 154 Pfam Protein kinase domain 33 142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01956 154 ProSitePatterns Serine/Threonine protein kinases active-site signature. 58 70 IPR008271 GO:0004672|GO:0006468
Pumo1g01956 154 ProSiteProfiles Protein kinase domain profile. 1 154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01956 154 Gene3D Transferase(Phosphotransferase) domain 1 3 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01956 Pumo-Chr1 42024831 42028446 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01956 46 145 Core Cell Cycle Gene Families AT1G02970 73.000 9.05e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Pumo1g01956 Pkinase 4.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01956 K06632 - gmx:547742 176.792