LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo1g01953	ATGGCGTTGAAAAACACGTCTTCCTGTTCCTGTTCTGTTCCCGTTGTCGTGTTGGATTTTCCTCTTTCGCAGCTCAAACTCAAAGCCCCATCTATTCTCTCCGTTCAGGCTGTCTTTGACATGGATGGAATGTACGTCATCTTCTTCTGTAACATCAACCGCGGGTCCTCTCCAAAAGCAAAAATGCTCCCTCTGCGTCCACAATCACAGCTTGGAGGACTACAAACATCACTGTCTCTTGTTTCTTCAGATGCTCTCCTGTCTCCTGATGAACCTAGATCAAACTCTGACAATCTCCGTGAATCTCCGGCTGAAAGTGCAAGTTCTCAAGAAACTTGGCCTACAGCTGATGCAGCCGCAGCAAAGAAGATGGAGAATGGAAAAGCGGAGATTAATTGCCTTGAGCAGAAAGTGATTCACCGTGTTTCTAGTGCAGACAAAGTTACTCTTCAGGACATTGCAAGAGAAAGTGTCGGTATGATATGTGAAAAAATGCATCGTCTACCTGAGGAATATCTAGAAGAGCTGAAGAATGGACTTCGAGTTATCCTTGAGGGAGGGAATGGTTCGCAGCATAGAGAGGATTTTTTCATTTTGCAGAAGCTTGTTCAGAGTAGAACTGATTTGACTGCCAAGACACTGGTCAGAGCACATCGAGTGCAGCTTGAAATCCTTGTTGCAATAAATACTGGAATTCAGGGATTTTTGCATCCTAGCATCAGTCTATCACAGACTTCCCTGATTGAGATCTTTGGCTATAAGAGATGCAGAAACATAGCGTGCCAAAACCAGCTTCCATCTGATGATTGTACCTGTGAAATATGCACCAACACTAATGGTTTCTGCAATCTTTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGAGGTGAATACATGCCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGTGAGCAACTTATTTGCATGGGCCCTTCTTCAAAGAGCGGAGCAGGACCAAGTGAAATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCAGAATTGTTGGGTTGGGTTAAAGATGTCTTCCAGCACTGTGCGCCGTCATGGGATGGAGAGGCGTTAATGAGGGAACTTGATTATGTTAGTAGGATCTTTCATGGGAGTAAAGATCCCCGAGGAAGGAAGCTATTTTGGAAGTGTGATGATCTCAAGGAAAAATTGAAAAGTAAAAAAATGGATTCAAAAGCTGCTTGCAGGGCAATATTGATGTTCTTCCAAGAGCTTGAGGTGGAATCCGCAAAAGGCCTGGAAAATGGAGAAAGTGGAAGGTTGATTGCTCCACAGGACGCATGCAATAGAATTGCTGAAGTGGTGCAGGAGGCTATAAGAAAGATGGAAATGGTAGCTGACGAGAAGATGAGGATGTTCAAGAAGGCTCACTTGGCTCTCGAAGCTTGTGATCGTGAACTAGCCGACAAGGCCAGGGAGGTGACAGAGCTCAAGATGGAGAGACAGAAAAAGAGGCTGCAGATAGAAGAGCTGGAGAAAATTGTGAGGCTGAAAAATGCAGAGGCAGATATGTTCCAATTGAAGGCCAATGAGGCCAAACGAGAGGCCGAGAGGCTTCAGAGGATTGCTCTTGCCAAGCAAGATAAATCAGAGGAAGAATTTACCAGCAACTACTTGAAACAACGATTAAACGAGGCCGAGGCCGAGAAGCAGTATCTTTACGAGAAGATCAAATTGCAGGAGAGTTCTTCTCGTGCTTCGCAGAGCAGTAGTGGTGGTGACCCCTCTCAGATGCTGATGTATTCCAAAATCCACGATCTGCTGTACAGTGTTCCTTCCAAAGCAGACAGTCAGGGTAATGAGCGCCACCCTTTTCGGACAAATCCCTGA	1890	0.4524	MALKNTSSCSCSVPVVVLDFPLSQLKLKAPSILSVQAVFDMDGMYVIFFCNINRGSSPKAKMLPLRPQSQLGGLQTSLSLVSSDALLSPDEPRSNSDNLRESPAESASSQETWPTADAAAAKKMENGKAEINCLEQKVIHRVSSADKVTLQDIARESVGMICEKMHRLPEEYLEELKNGLRVILEGGNGSQHREDFFILQKLVQSRTDLTAKTLVRAHRVQLEILVAINTGIQGFLHPSISLSQTSLIEIFGYKRCRNIACQNQLPSDDCTCEICTNTNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPSSKSGAGPSEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALMRELDYVSRIFHGSKDPRGRKLFWKCDDLKEKLKSKKMDSKAACRAILMFFQELEVESAKGLENGESGRLIAPQDACNRIAEVVQEAIRKMEMVADEKMRMFKKAHLALEACDRELADKAREVTELKMERQKKRLQIEELEKIVRLKNAEADMFQLKANEAKREAERLQRIALAKQDKSEEEFTSNYLKQRLNEAEAEKQYLYEKIKLQESSSRASQSSSGGDPSQMLMYSKIHDLLYSVPSKADSQGNERHPFRTNP	629

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo1g01953	629	MobiDBLite	consensus disorder prediction	86	115	-	-
	Pumo1g01953	629	PIRSF	UCP025218	56	616	-	-
	Pumo1g01953	629	SMART	PHD_3	286	346	IPR001965	-
	Pumo1g01953	629	Pfam	PHD - plant homeodomain finger protein	256	379	IPR032881	-
	Pumo1g01953	629	CDD	PHD_OBE1_like	286	345	IPR047578	-
	Pumo1g01953	629	MobiDBLite	consensus disorder prediction	610	629	-	-
	Pumo1g01953	629	Coils	Coil	480	549	-	-
	Pumo1g01953	629	MobiDBLite	consensus disorder prediction	86	117	-	-
	Pumo1g01953	629	MobiDBLite	consensus disorder prediction	613	629	-	-
	Pumo1g01953	629	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	206	221	IPR004082	-
	Pumo1g01953	629	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	366	385	IPR004082	-
	Pumo1g01953	629	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	247	268	IPR004082	-
	Pumo1g01953	629	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	293	313	IPR004082	-
	Pumo1g01953	629	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	221	236	IPR004082	-
	Pumo1g01953	629	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	509	529	IPR004082	-
	Pumo1g01953	629	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	164	186	IPR004082	-
	Pumo1g01953	629	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	548	570	IPR004082	-
	Pumo1g01953	629	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	64	610	IPR004082	-
	Pumo1g01953	629	Pfam	Coiled-coil region of Oberon	474	608	IPR032535	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo1g01953	Pumo-Chr1	41969068	41972276	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo1g01953	256	358	PHD Gene Family	AT5G57380	31.731	3.48e-09	57.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo1g01953	-		-	gmx:100781890	1052.74