Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01944 ATGGGTCATAAATGTGGCTGTGGAGTCAACATATCTGGCTTGTCACTTTATCTAGGAAACTTCTCCGCACACCAAGTTCCTATTGTTTTTCTGGACTTGTGTGACAATCTAAAGGAACTTGCCAAGGCGAGTGGCAAGATTGTGGTGTGTGAAGACAAGAATGAAACCCTTTCTGATCAAGTGTATAATGTGGGTTCGTCAAATGTTGTCGGATCCGTGTTTATATCAAGTACCACTGACACGACGTTTTTCTTAGCGAATGGTTCTGCAGCAATCATTATTAACCCGGAAAATGGAGAAATTGTCAAAGCAAGCATGTCTTTTAAGGTAACAGCTTTAGGTACTAAACCAGCACCGAGTGTGGATATTTACAGTTCCAGAGGGCCTTCAAGTAGTTGTCCATTTGTGTTGAAACCGGACATCACTGCTCCTGGTACATCAATCTTAGCTGCATGGCCTCCAAATCTTCCATTGGCTCAATATGGTTCACAGATCCTTTTCAGTAACTTCAAATTATTAAGTGGAACATCTATGGCATGCCCTCACGTAGCAGGTGTGGGAGCACTGTTAAGAGGAGCACACGATTATGTCAGTCTTGTTTGTGCATCAAACTTCACTCAACAAAACATCGCAATCATCATATCACTAGATCCTCTTCCAATAATTGTTCCAAACCTTCCTTGGATCTCAACTACCCTTCTTTCATTGCTTTCTTCTAACGATTCAAGGGTAACTTGGGAATTTCAGAGAACGGTGACCAATGTTGGGGAGGGACAAACAATCTATACTGCCAGCGTTACATTCATCAAAGGATTTAATGTCAGCGTCATCCCATGCAAATTTGTGTTCAAGGAGATGAACGAGAAGCTAAGTTACAAGTTGAGGATAGAAGGTCCAAAGGTCGAAGGCTTTAGGTATCTCACTTGGACGGACGTGAAGCATGTGGTGAGGAGCCCTATTGTGGTCACCACTACCGTCAACTACAATTTCTAG 993 0.426 MGHKCGCGVNISGLSLYLGNFSAHQVPIVFLDLCDNLKELAKASGKIVVCEDKNETLSDQVYNVGSSNVVGSVFISSTTDTTFFLANGSAAIIINPENGEIVKASMSFKVTALGTKPAPSVDIYSSRGPSSSCPFVLKPDITAPGTSILAAWPPNLPLAQYGSQILFSNFKLLSGTSMACPHVAGVGALLRGAHDYVSLVCASNFTQQNIAIIISLDPLPIIVPNLPWISTTLLSLLSSNDSRVTWEFQRTVTNVGEGQTIYTASVTFIKGFNVSVIPCKFVFKEMNEKLSYKLRIEGPKVEGFRYLTWTDVKHVVRSPIVVTTTVNYNF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01944 330 Gene3D - 224 326 - -
Pumo1g01944 330 Pfam Subtilase family 52 197 IPR000209 GO:0006508|GO:0008236
Pumo1g01944 330 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 193 322 IPR045051 -
Pumo1g01944 330 CDD PA_subtilisin_like 8 107 - -
Pumo1g01944 330 Gene3D Peptidase S8/S53 domain 115 196 IPR036852 GO:0004252|GO:0006508
Pumo1g01944 330 ProSitePatterns Serine proteases, subtilase family, serine active site. 175 185 IPR023828 -
Pumo1g01944 330 Gene3D - 39 114 - -
Pumo1g01944 330 SUPERFAMILY Subtilisin-like 60 203 IPR036852 GO:0004252|GO:0006508
Pumo1g01944 330 Pfam Fibronectin type-III domain 239 322 IPR041469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01944 Pumo-Chr1 41573443 41574582 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01944 6 300 Subtilisin-like Serine Gene Family AT5G67090 30.959 2.10e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01944 - - gmx:100787831 285.034