Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01941 ATGCAAACTCTCCGTTACATGTCTTTTGCTGTAGTATTTTATTCTCTGTTACTCAACCCTTGCCATTGTCTCAATCGCAAATTATTTAATCCTTCCAAAATTCAAAATGAGGATCAATGGCAAGTAGGAGCAGCTACATGGTTTGGACCACCAGAGGGTGGTGGGTCGGATGGGGGTGCTTGTGGATACGGTGACAGTGTGGAGAAACCGCCACTCTCTAAAATGGTATCAGCTGGGGGTCCTTCTCTTTTCCGTGGCGGCATAGGATGTGGGGCTTGTTATCAGGTAAAATGCACAGAAAATGCCTTATGCTCGGGCCCGGTGAGCGTGATGATAAGTGATGAATGCCCCGGTTGTATCTTACAATCAGTTCATTTTGATCTCAGTGGCACTGCCTTTGGTTCCATGGCAACTCCAGGCCAGGCATATAATCTTCGCAATGTTGGAGAGCTTAATATTTTCTACAGAAGGGTTGCATGCTCCTTTGGGAACTCCATAGTCTTTATCATTGATAATGGGGCCAACTCATACTATTTTGCTACCGAAATTGAATACGAAAATGGGGATGGTGACCTTGTGGACATTGAGTTGAAGCAAGCTAATTCTGACACGTGGCTTCCCATGCAGCGTTCATGGGGTACAAGGTGGGCTTTGAACTTAGGTTTACAATTGCAAGCGCCATTCTCTATTAAACTCACAGAAGAGGGCAAGGACTATTACAAGACCATTGTGGCTGATAGTGTAATTCCACATGACTGGAAACCTGGCCAAGTGTATCGATCTGATCAATGGCAAGTAGCAGCAGCTACATGGTTCGGATCACCAGAGGGTGGTGGGTCGGATGGGGGTGCTTGTGGATACGGTGACAGTGTGGAGAAACCTCCACTCTCTAAAATAGTATCAGCTGGAGGTCCTTCTCTTTTCCGTGGCGGGATAGGATGCGGGGCTTGTTTTCAGGTAAAATGCACAGAAAATGCTGCATGCTCGGGAAACCCTGTTAGTGTGATGATAACTGATGAATGTCCCGGTTGTAACTTAAGATCAATCCATTTTGATCTCAGTGGAACTACCTTTGGTTCCATGGCAACTCCAGGCCAGGCATATAATCTTCGCAATGCAGGAGAGCTTAATATTCTTTATCGAAGGGTTGCATGCTCCTATGGGAACTCTATAGCCTTTATCATCGATAATGGGGCCAACCCATATTATTTTGCTACTGAAATAGAATACGAAAATGGGGATGGTGACCTTGTGGACATTGAGTTGAAGCAAGCTAATTCTGACACGTGGCTTCCAATGCAGCGTTCATGGGGTGCAAGGTGGGCTTTGAACTTAGGTTTAGAATTGCAAGCGCCATTCTCTATTAAGCTCACAGAAGAAGGCAAGGGGCTATTACAAGACCATTGTCGTGATTGTTGCACTCGTCGGGAACCTCGCCATCATAGCCAAGAACAAAACCATAAAAGCCCTTCTCTCCTCGGCGATGTCTCCGCCGTGATTGTTGCGCTCGCCGGGAACTTTGCCGCCGCCACCACGCTGATGTGCTTCCTCGGCATGTCAGCGTTGCTTGCTATTGTTGATGTCACGATTAATGTGTGTATTGCAAGGAACAACATCGAGGATATGCGGTCCTCAGTTGCTATACTCCAACAATCTTTGGAACAGGAAGCAAAAGCACATGAGGTTAAACATCACAAAAATGTTGAGTTTCGCTCCAAGATCACTGAGGGTTAA 1734 0.4625 MQTLRYMSFAVVFYSLLLNPCHCLNRKLFNPSKIQNEDQWQVGAATWFGPPEGGGSDGGACGYGDSVEKPPLSKMVSAGGPSLFRGGIGCGACYQVKCTENALCSGPVSVMISDECPGCILQSVHFDLSGTAFGSMATPGQAYNLRNVGELNIFYRRVACSFGNSIVFIIDNGANSYYFATEIEYENGDGDLVDIELKQANSDTWLPMQRSWGTRWALNLGLQLQAPFSIKLTEEGKDYYKTIVADSVIPHDWKPGQVYRSDQWQVAAATWFGSPEGGGSDGGACGYGDSVEKPPLSKIVSAGGPSLFRGGIGCGACFQVKCTENAACSGNPVSVMITDECPGCNLRSIHFDLSGTTFGSMATPGQAYNLRNAGELNILYRRVACSYGNSIAFIIDNGANPYYFATEIEYENGDGDLVDIELKQANSDTWLPMQRSWGARWALNLGLELQAPFSIKLTEEGKGLLQDHCRDCCTRREPRHHSQEQNHKSPSLLGDVSAVIVALAGNFAAATTLMCFLGMSALLAIVDVTINVCIARNNIEDMRSSVAILQQSLEQEAKAHEVKHHKNVEFRSKITEG 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01941 577 SUPERFAMILY PHL pollen allergen 390 462 IPR036749 -
Pumo1g01941 577 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Pumo1g01941 577 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Pumo1g01941 577 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Pumo1g01941 577 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Pumo1g01941 577 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Pumo1g01941 577 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Pumo1g01941 577 SUPERFAMILY Barwin-like endoglucanases 38 162 IPR036908 -
Pumo1g01941 577 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 261 IPR007117 -
Pumo1g01941 577 Pfam Expansin C-terminal domain 391 462 IPR007117 -
Pumo1g01941 577 Pfam Expansin C-terminal domain 167 250 IPR007117 -
Pumo1g01941 577 Gene3D - 386 470 IPR036749 -
Pumo1g01941 577 Gene3D - 161 257 IPR036749 -
Pumo1g01941 577 SUPERFAMILY Barwin-like endoglucanases 259 388 IPR036908 -
Pumo1g01941 577 Gene3D - 258 385 IPR036908 -
Pumo1g01941 577 Gene3D - 28 160 IPR036908 -
Pumo1g01941 577 CDD DPBB_EXPB_N 264 385 - -
Pumo1g01941 577 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 402 461 IPR007117 -
Pumo1g01941 577 Pfam Lytic transglycolase 301 379 IPR009009 -
Pumo1g01941 577 Pfam Lytic transglycolase 77 147 IPR009009 -
Pumo1g01941 577 PRINTS Major pollen allergen Lol pI signature 409 424 IPR005795 GO:0005576|GO:0019953
Pumo1g01941 577 PRINTS Major pollen allergen Lol pI signature 393 408 IPR005795 GO:0005576|GO:0019953
Pumo1g01941 577 PRINTS Major pollen allergen Lol pI signature 439 456 IPR005795 GO:0005576|GO:0019953
Pumo1g01941 577 PRINTS Major pollen allergen Lol pI signature 362 377 IPR005795 GO:0005576|GO:0019953
Pumo1g01941 577 PRINTS Major pollen allergen Lol pI signature 302 313 IPR005795 GO:0005576|GO:0019953
Pumo1g01941 577 PRINTS Major pollen allergen Lol pI signature 322 332 IPR005795 GO:0005576|GO:0019953
Pumo1g01941 577 SMART dpbb_1 300 380 IPR007112 -
Pumo1g01941 577 SMART dpbb_1 76 143 IPR007112 -
Pumo1g01941 577 SUPERFAMILY PHL pollen allergen 165 261 IPR036749 -
Pumo1g01941 577 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 165 IPR007112 -
Pumo1g01941 577 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 282 390 IPR007112 -
Pumo1g01941 577 PANTHER EXPANSIN-B3 17 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01941 Pumo-Chr1 41537471 41556421 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01941 264 468 Expansin Gene Family AT1G65680 57.416 7.47e-82 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01941 - - gmx:100786475 442.195