Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01931 ATGAAGAGGCTCAACAACTCGGATACTATGGCTACTTCACTTTCCATGTGCCCATCAAAAGGTTTGAATGTGAGAAAAGAAAGTAAGGGATACAGTGAAGAATTTCAGGCAATGTTAGATAGATTAGAGCAAGAAGACAGCTATGAAGATGGTAGCAACTTAGTGCTGGAGAAGAAAAGGAGACTGAGTTTTGATCAGGTGAAAGCCTTAGAGAGAAGCTTTGAGTTGGACAACAAGCTAGAGCCAGAGCGCAAGTCAAAGCTAGCACAAGAACTTGGCCTTCAACCGAGACAGGTTGCTATTTGGTTCCAAAATCGTCGAGCCCGTTGGAAAACCAAGCAATTGGAGAGAGACTATGCCATTCTCAAGTCCAATTATGATGTTCTCAAGCTTGACTACAACAATCTTCACCAAGAGAATCAGGCTCTCACTCTTCAGGTGAGACAATTGAAAGAAAAATTGTTCAGGGGTAAAGCTGAAAGCAATGAGTCAGTGAAAGAGGAATCTCCCATTTCAGAGGTTAGAGACAGAGGAGCATCAGAGAGCAATTCAAATGGTGTGGTTAAGGAAGAAAGTAATGTTGATTCTCCTCTGTGTGTGAATGGATCTTTGCCCAGTTCAAGTTCAGTGGTAAACTGGCTTCAGTACTCTGATTCAAGAGGGTCTCCTCCTGATAAAATGTTTCAGACTCAGTTTATGAGAATGGAGGAGCAGAATTTCTTTAGTGTCAATGAGTTCTGTTTCTTTTCAGTTGATCAATCCCCTACCCTGTAG 774 0.4199 MKRLNNSDTMATSLSMCPSKGLNVRKESKGYSEEFQAMLDRLEQEDSYEDGSNLVLEKKRRLSFDQVKALERSFELDNKLEPERKSKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYAILKSNYDVLKLDYNNLHQENQALTLQVRQLKEKLFRGKAESNESVKEESPISEVRDRGASESNSNGVVKEESNVDSPLCVNGSLPSSSSVVNWLQYSDSRGSPPDKMFQTQFMRMEEQNFFSVNEFCFFSVDQSPTL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01931 257 Gene3D - 53 119 - -
Pumo1g01931 257 SUPERFAMILY Homeodomain-like 56 115 IPR009057 -
Pumo1g01931 257 SMART HOX_1 56 117 IPR001356 GO:0003677
Pumo1g01931 257 ProSiteProfiles 'Homeobox' domain profile. 57 113 IPR001356 GO:0003677
Pumo1g01931 257 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 38 192 IPR045224 GO:0003700
Pumo1g01931 257 Pfam Homeobox associated leucine zipper 113 154 IPR003106 GO:0006355|GO:0043565
Pumo1g01931 257 MobiDBLite consensus disorder prediction 159 192 - -
Pumo1g01931 257 CDD homeodomain 58 114 IPR001356 GO:0003677
Pumo1g01931 257 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Pumo1g01931 257 MobiDBLite consensus disorder prediction 176 192 - -
Pumo1g01931 257 Pfam Homeodomain 58 111 IPR001356 GO:0003677
Pumo1g01931 257 Coils Coil 126 153 - -
Pumo1g01931 257 MobiDBLite consensus disorder prediction 159 175 - -
Pumo1g01931 257 FunFam Homeobox-leucine zipper protein HOX13 61 110 - -
Pumo1g01931 257 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Pumo1g01931 257 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01931 Pumo-Chr1 40859334 40861180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01931 1 257 Homeobox Transcription Factor Family AT4G40060 40.136 3.39e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo1g01931 Homeodomain 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01931 K09338 - zju:107420758 279.641