Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01927 ATGGCACTAAAAATCACCTATGTTGACAACATTGTAATTGGAAGAATAGATTGGAGGATAAAGGTTAGGGTGATACGTTTGTGGAAGCAACAAGAATTTGAAAACATGATAGAGGAAGGAAAAGCTTATTATTTTGACAACCTGTTCATGACTGATAGTGATCCAAAGTTTAAGGCTACAAAGCACAAGTATAAAATAAGCTTTTTGAAGAACACAAAGTGCAAAAGTATTGTTGATAGTATACCTATAAGATACTTTGATTTTGTTCCATTTGCAAATATACTTGCAGCTGCAAATGACGGGACTTTGTTTGATGTCATAGGGCATGCTGTTGAAATTGACAACATGAAAGATATGGACACCAAAGGAGGAAAAACAAAATTAATTGATGTTGTATTAGAAGATTTGGAGAGTAACATTGTTGTCTGTACTTTATGGGGTGAATTTGCTGAGCAGATGAAGGCATTTGTTGACAAACATAGTAATAGTGGTGCTATTACTATTATCTTGCAAATGTGTAAAATGAAGACCTTTAAGGGTTTGAGCACAAAGTCGCTGCCTGCATTAAGAATCAGAATTATTGAATACATATACACATCAGAGGATTGA 609 0.3415 MALKITYVDNIVIGRIDWRIKVRVIRLWKQQEFENMIEEGKAYYFDNLFMTDSDPKFKATKHKYKISFLKNTKCKSIVDSIPIRYFDFVPFANILAAANDGTLFDVIGHAVEIDNMKDMDTKGGKTKLIDVVLEDLESNIVVCTLWGEFAEQMKAFVDKHSNSGAITIILQMCKMKTFKGLSTKSLPALRIRIIEYIYTSED 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01927 202 SUPERFAMILY Nucleic acid-binding proteins 86 192 IPR012340 -
Pumo1g01927 202 Gene3D - 80 200 IPR012340 -
Pumo1g01927 202 Pfam Domain of unknown function DUF223 31 96 IPR003871 -
Pumo1g01927 202 SUPERFAMILY Nucleic acid-binding proteins 4 78 IPR012340 -
Pumo1g01927 202 CDD RPA1_DBD_B_like 105 180 - -
Pumo1g01927 202 Gene3D - 30 79 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01927 Pumo-Chr1 40645626 40647874 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01927 31 186 Core DNA Replication Machinery Family AT5G08020 22.424 6.02e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01927 - - mtr:112416537 145.206