Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01909 ATGGCTTCTTTGATCGGTCTGAAATTGTTCTCAATTCTTCTTTTGTGCATACTTAGCTTTTCACCTACTGAAACAGCCTCAACTTTCAGCCATTACTACTGCACAAACAAGCCTAAGTTTAGTCCCAAAAGCACTTACCAATTCAACCTAAAGAAACTCTTATCTATACTAACACTTACATCCAAAGCTTTTGACAGCACCAACCACAGCTTCTTCTACAACACCACAGTTATCAGTGGAACAAACAAACGTGACAATAATATTGTCTATGGCCTCTTCATGTGCAATGGATACATAATAGAGAAATGTGGAGAATGTGTGAGGAGATCCATCCAGACACTTAAATCGAAGTGTGCCTTCAACAAAGAGGCTATAGTTTGGACTCATGAATGCATGGTTCGTTACTCGAACCGGTTTTTCTTCAACACTACAGAGAAATGGCCATCATGGTGTATTCAGAATGGTGAGGATTATCATGGCCAATTGGATACTTTCAACAAAGTGCTGAGTTCCTTGATGGAGGATCTTCTAACTGAAGCCAGTGAAGCTCCGATGGGTTCTAATAAATTTGCTGTGAAGAAAGCAACTATCTCTGAGGACAGACACTTGTTTGGCTTTGCTCAGTGCATCCCATACCTCTCCAAGGACAACTGCAAGAAGTGCCTTAGGGATGCCAAGGATTTTCTTCAAACATGTGCTAGAGGCAAGATAGGAGGAAGAGTTCTATATCCAAGTTGTGTTGTTAGATATGATCCTTATCTATTTTTCCCACTTCCTAGAGAAAAACGAAAGAATCCCGGAGCACTTGCATCAATCATATTTTTTCATGCACTTGTTCCAGTCATTGTTTTGGTTTTTGGTTGCTATGTGCTACATAGGGAGTCAAGGAAGAATCACAAGCAAAGAAAAGGAAATTGTGGGGAAGAGATTACAACAGAAATGAACTCTTTGCAATTTGATTTGTGTACTATTCAAGAAGCAACAAACAAGTTTTCTGATGATAACACGATAGGGGAAGGTGGTTTTGGAGCAGTTTACAAGGGTATGTTTCCAAATGGACTTGAAATAGCCGTAAAGAGGCTAAAAAAAAATTCCAGTCAAGGAGCTATAGAATTCAAGAAAGAGGTTTTGCTAATTTCCAAGCTTCAACACAGAAATCTTGTGAGACTGTTAGGGTTTTGCATGGAAAGGAATGAGAAGATACTCGTTTATGAATTCGTGCACAACAAAAGCCTTGATTACTACTTATTCAGCCCTGAAAACCGTAGGAAATTAAGTTGGCCTGATCGATACAAGATTATAAGAGGAATTGCACGAGGAATTCTTTATCTCCACGAGGATTCCCATCTCAACATTATACACTGCGATCTTAAACCCAACAACATATTGTTAGACAGCAAAATGAATGCAAAGATATCAGATTTTGGGTTGGCAAGGATTATTTCCATTGATCAAATGCAAGGAAATACTAGTATAATTTCTGGGACATATGGTTATATGTCTCCTGAATATGCAATGCTTGGCCAATTTTCTGTAAAATCTGATGTATTCAGCTTTGGAGTCATAATTCTTGAGATCATTAGTGGAAAAAGAAATGTTGATTGTAGTGGGATAGATTCCGATGACCTCTTGAGCCATGCTTGGAAGAAGTGGAAGGAAAGTAAAGCATTTGAATTGTTGGATCCCACATTAGAACACTTGGTTTCTGAAACAGAAATCACTAGGTGCATACAAATTGGTCTATTATGTGTGCAAGGAAACCCAGATCAGAGGCCTATCATGGCAACAATTGCTTTGTATTTCAACTGTGATCCAGTTGAGCTTCCTATACCTCAAGAGCCAGCATTTTTCATGCGTGGAAAAATAGAAATCAAGGATGGCTGA 1884 0.388 MASLIGLKLFSILLLCILSFSPTETASTFSHYYCTNKPKFSPKSTYQFNLKKLLSILTLTSKAFDSTNHSFFYNTTVISGTNKRDNNIVYGLFMCNGYIIEKCGECVRRSIQTLKSKCAFNKEAIVWTHECMVRYSNRFFFNTTEKWPSWCIQNGEDYHGQLDTFNKVLSSLMEDLLTEASEAPMGSNKFAVKKATISEDRHLFGFAQCIPYLSKDNCKKCLRDAKDFLQTCARGKIGGRVLYPSCVVRYDPYLFFPLPREKRKNPGALASIIFFHALVPVIVLVFGCYVLHRESRKNHKQRKGNCGEEITTEMNSLQFDLCTIQEATNKFSDDNTIGEGGFGAVYKGMFPNGLEIAVKRLKKNSSQGAIEFKKEVLLISKLQHRNLVRLLGFCMERNEKILVYEFVHNKSLDYYLFSPENRRKLSWPDRYKIIRGIARGILYLHEDSHLNIIHCDLKPNNILLDSKMNAKISDFGLARIISIDQMQGNTSIISGTYGYMSPEYAMLGQFSVKSDVFSFGVIILEIISGKRNVDCSGIDSDDLLSHAWKKWKESKAFELLDPTLEHLVSETEITRCIQIGLLCVQGNPDQRPIMATIALYFNCDPVELPIPQEPAFFMRGKIEIKDG 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01909 627 FunFam cysteine-rich receptor-like protein kinase 10 407 608 - -
Pumo1g01909 627 CDD STKc_IRAK 337 598 - -
Pumo1g01909 627 ProSiteProfiles Gnk2-homologous domain profile. 28 140 IPR002902 -
Pumo1g01909 627 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 78 619 - -
Pumo1g01909 627 Gene3D Phosphorylase Kinase; domain 1 291 406 - -
Pumo1g01909 627 Gene3D Transferase(Phosphotransferase) domain 1 407 603 - -
Pumo1g01909 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Pumo1g01909 627 SMART serkin_6 331 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01909 627 Pfam Protein tyrosine and serine/threonine kinase 334 598 IPR001245 GO:0004672|GO:0006468
Pumo1g01909 627 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Pumo1g01909 627 SUPERFAMILY Protein kinase-like (PK-like) 316 617 IPR011009 -
Pumo1g01909 627 ProSiteProfiles Gnk2-homologous domain profile. 146 255 IPR002902 -
Pumo1g01909 627 Gene3D - 149 255 IPR038408 -
Pumo1g01909 627 Gene3D - 26 140 IPR038408 -
Pumo1g01909 627 Pfam Salt stress response/antifungal 156 251 IPR002902 -
Pumo1g01909 627 Pfam Salt stress response/antifungal 34 137 IPR002902 -
Pumo1g01909 627 FunFam Cysteine-rich receptor-like protein kinase 10 292 406 - -
Pumo1g01909 627 ProSiteProfiles Protein kinase domain profile. 331 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01909 Pumo-Chr1 40334970 40338205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01909 7 626 Receptor kinase-like Gene Family AT4G05200 41.886 2.41e-167 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo1g01909 PK_Tyr_Ser-Thr 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01909 - - mtr:11443024 811.601