Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01889 ATGAAAAATAGAGATCTCAGGTGCATCGAATGGAAAGCTGCTCTCACTGAAGCTGCCAATTTAGCTGGGTGGGACTCTGGAACATACAGGAATGATCCTGAATTGCTTAAGGACATTGTTCGAGCTGTTTTGGGAAAATTGCCTCCTAGATACCAAAACCAAAGTAAAGGACTGGTTGGAATTGAGGAACATTATAAACAGATTGAATCATTTCAAAAAATTGGGTCTAGTGAAATTAGAACCCTTGGAATATGGGGCATGGGTGGCATCGGTAAAACCACCCTTGCTACTGCTTTATATGATAAATTGTCTCCTGAGTTTGAGGGTTGTTGCTTCCTCACAAAGGTTGTTGATAAGTTTGAGATGAGTAGGCTCCGGGGTAAAAGAGTTTTCATTGTCTTGGATGATGTGACTACCTCAGAGCAATTTGAAAAACTAATTGGAGAATATGACTTCTTGGGACCCGGAAGTAGGGTCATTGTTACAACTAGAAATAAGCAAATACTTGGCCCAATTGATCATGAAATATATTCGGTCGAGGAATTGAACTCTCGTCACTCTCTTAAGCTTTTCTGTTTGACTGTTTTTGGAGAAAAACAACCTAAAGATGGATATGAAGATCTATCAAGAAGAGTAATTTCCTATTGCAAAGGTATTCCTTTGGCTTTAAAAATTTTGGGTGCAAGCCTTTGTCAAAGAAGTAAAGAGGCATGGGAAAGCGAACTGAGAAAAATCCAAAAGATTCCAAATATGGAAATTCATAACGTATTAAAATTAAGTTATGATGACTTAGATTGTTCTCAAAAGGAGATATTTTTAGACCTTGCATGCTTCTTCAAAGGAGGAAAAAGAGATTGGGTAACAAGATTACTGGAAGCTTTTGGTTTCTTTCCAACATCTGGGATAGAAGTCCTGTTAGATAAATCTCTCATAACAATTTCAAAATACAATGATATAGAAATGCATGACTTGACACAAGAAATGGGTCGAGAAATTATTCGTCAACAATCTATCAAAGACCCTGGAAGACGAAGTCGATTGTGCAAACATGAGGAAGTGCTTGATGTTTTGAAACATAACAGGGGAACAGATGTTGTTGAAGGCATAATTTTAGATTTGCATGAATTAACTGGGGATCTATTTTTGAGCTCTGATTCCCTTGCAAAGATGACTAACCTAAGATTTCTTCAAATCCATAAAGGGTGGTGGAGGGATAACAAATTTAATGTGTACCTTGGTAATGGTCTTGAGTCATTGTCTAATGAATTGAGGTACCTTCACTGGGATGGATGCAGTCTTGAGTCTTTGCCATCTACCTTTGGCGCTGAACAACTTGTAGAGATTTGCATGCCTCGTAGCAAGCTCAAAAAGCTTTGGGACGGGGTTCAGAACCTCGTGAGTTTAAAGACAATTGACCTTAGGGAGTCCCGAGACTTGATTGAGATCCCAGACTTATTTACGGCAAAAAAACTTGAAAGAGTAAATCTTAGTTACTGTAAAAGCTTGCGTCAGCTCCATGTAAATTCAAAATACCTTTGTGTACTTGACCCCTTAGGTTGTTCATCTATCAGGGAAATCTCAGTGACATCAGAGGAAAAGACAGAATTAGGCTTATCTCATACTACTATATGTGCATTGTCGTCATCAATTGGTCACTTATTATCATTAGAAGTGTTAGACCTAAGTGGAATTCATGTTGAGATCTTGCCAGCAAACATCAAAAACTTTTCAATGATGAGAAAGCTGAAATTAGATGATTACTGCAGGAAACTAGTGTCTCTTCCAGAGTTTCCAAAATCTCTAACAGAGCTTCATTTAAATGATTGTCGGAAACTCGTGTCTCTGCCAGAGCTTCCACCATCCCTAAGAGAGCTTGATTTAAAAAATTGCTGGAGACTCATGTCTCTGCCGGAGCTTCCACCATCCCTAAGAGAGCTTCATTTAAATAATTGCTGGAGACTCGTGTCTCTGCCGGAGCTTCCACCATCCCTAACAGAGCTTCATTTAAATAATTTTTGGAGTCTTGTGTCTCTGCCGGAGCTTCCACCATCCCTAAGAGAGCTTCATTTAAATAATTGCCAGACACTCATGTACCTGCCAAAGCTTCCACCAGGGGTGAAAGAGGTGAGAGCCTTCAACTGCATTTCTCTCGAGACAGATATCACTCAATGGCTAGTATTACAACACATATTTCAGAGTCGCATACCCTACTTACACAAAGACCCTACATACTGTGAGGATGACTACTTCTTCTTCCCGGGAGATCATGTCACCAACAGCAAGTATGGATTTCATACAACAGAGAGTTCAATCACTATTCCTCATCTTCCAAAATCTCATTTCTGTGGTTTCTTTTATTGCATCATTCTCTCTGAGGGATCAGTCTTTAAAGATCAACGGTTTTCTTGTTCTGTCTATCGAGATGATATATTGCTCTGTTTGGACCGTCGCAAGTTTATAGGCACCGAAAATTTAATTTCAGATCACCCAAAGAAACCAAAAAACATAATTGTTGGCCCTTCAAAGCAAGATTTAGAGGATCCCGTACCAGTCACAGTGGTGGTCGTTGATCCGCAACTCGCCTACCAGGAGTGTGTCTATCTCTGTCAGGAGGTTCGCGGAATATGCATATGTGGCAACAAGGGCATAGCGACATTGTTGAGGGACCGAACCATTAGGTTGTGGTCTCTGGACAACAACTGCAAGTTCTACCTTAAGACAGTGGAGGAATGGCAATCTGTAGAGACGTGTGTGGCTCGTAAGGCACCAGTCGAAGCAGTTATAAAGCTGCCCTCAGGGGAGCTTGTTACAGGTTACACTCTATTATTGATGGATCTTTTTGTAAGGATTGAAGTTTGGCTAGGAAGGAGCTTGTGGAGCAAGGCAATGTGA 2892 0.4032 MKNRDLRCIEWKAALTEAANLAGWDSGTYRNDPELLKDIVRAVLGKLPPRYQNQSKGLVGIEEHYKQIESFQKIGSSEIRTLGIWGMGGIGKTTLATALYDKLSPEFEGCCFLTKVVDKFEMSRLRGKRVFIVLDDVTTSEQFEKLIGEYDFLGPGSRVIVTTRNKQILGPIDHEIYSVEELNSRHSLKLFCLTVFGEKQPKDGYEDLSRRVISYCKGIPLALKILGASLCQRSKEAWESELRKIQKIPNMEIHNVLKLSYDDLDCSQKEIFLDLACFFKGGKRDWVTRLLEAFGFFPTSGIEVLLDKSLITISKYNDIEMHDLTQEMGREIIRQQSIKDPGRRSRLCKHEEVLDVLKHNRGTDVVEGIILDLHELTGDLFLSSDSLAKMTNLRFLQIHKGWWRDNKFNVYLGNGLESLSNELRYLHWDGCSLESLPSTFGAEQLVEICMPRSKLKKLWDGVQNLVSLKTIDLRESRDLIEIPDLFTAKKLERVNLSYCKSLRQLHVNSKYLCVLDPLGCSSIREISVTSEEKTELGLSHTTICALSSSIGHLLSLEVLDLSGIHVEILPANIKNFSMMRKLKLDDYCRKLVSLPEFPKSLTELHLNDCRKLVSLPELPPSLRELDLKNCWRLMSLPELPPSLRELHLNNCWRLVSLPELPPSLTELHLNNFWSLVSLPELPPSLRELHLNNCQTLMYLPKLPPGVKEVRAFNCISLETDITQWLVLQHIFQSRIPYLHKDPTYCEDDYFFFPGDHVTNSKYGFHTTESSITIPHLPKSHFCGFFYCIILSEGSVFKDQRFSCSVYRDDILLCLDRRKFIGTENLISDHPKKPKNIIVGPSKQDLEDPVPVTVVVVDPQLAYQECVYLCQEVRGICICGNKGIATLLRDRTIRLWSLDNNCKFYLKTVEEWQSVETCVARKAPVEAVIKLPSGELVTGYTLLLMDLFVRIEVWLGRSLWSKAM 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01889 963 Gene3D Ribonuclease Inhibitor 531 725 IPR032675 -
Pumo1g01889 963 Gene3D - 2 47 IPR035897 -
Pumo1g01889 963 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 617 IPR044974 GO:0006952
Pumo1g01889 963 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 275 IPR027417 -
Pumo1g01889 963 SUPERFAMILY L domain-like 380 724 - -
Pumo1g01889 963 SMART LRR_bac_2 682 702 - -
Pumo1g01889 963 SMART LRR_bac_2 661 681 - -
Pumo1g01889 963 SMART LRR_bac_2 640 660 - -
Pumo1g01889 963 SMART LRR_bac_2 619 639 - -
Pumo1g01889 963 SMART LRR_bac_2 598 618 - -
Pumo1g01889 963 SMART LRR_bac_2 420 439 - -
Pumo1g01889 963 Gene3D - 181 265 IPR042197 -
Pumo1g01889 963 PRINTS Disease resistance protein signature 463 479 - -
Pumo1g01889 963 PRINTS Disease resistance protein signature 81 96 - -
Pumo1g01889 963 PRINTS Disease resistance protein signature 216 230 - -
Pumo1g01889 963 Pfam NB-ARC domain 125 251 IPR002182 GO:0043531
Pumo1g01889 963 SUPERFAMILY "Winged helix" DNA-binding domain 252 358 IPR036390 -
Pumo1g01889 963 Gene3D Ribonuclease Inhibitor 357 530 IPR032675 -
Pumo1g01889 963 Pfam Leucine Rich Repeat 445 463 IPR011713 -
Pumo1g01889 963 Gene3D - 48 119 IPR027417 -
Pumo1g01889 963 Gene3D - 120 179 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01889 Pumo-Chr1 39061171 39068388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01889 59 678 WRKY Transcription Factor Family AT5G45050 34.024 1.76e-91 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01889 - - gmx:100813640 1278.46