Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01881 ATGTGTAGCGTGATAATCATTGCAGGTGCAGCACTTGGAATTCATAATGGGACTGATCCTGAATTACTTAAGCACATTGTCGAAGATGTTTTGCAGAAGTTGCCTCCTAGATTCCCAAACCAACATAAAGGACTGGTTGGGGTTGAGGAAAATATTAAACAGATTGAATCATTACTAAGTAAAGTTAAAATCCTTGGAATATGGGGCATGGGTGGCATAGGTAAGACCACCCTTGCTACTGCTTTATATAAGAAACTGTCTCATAATTTCGAAGGTGGTTGCTTCTTCTCAAATGTAAGGGAAAAATCAGACAATCTTAAAGATTTTTGTGACAAGTCTGAGATAAGTAAGCTTCAAGGTAAAAAAGTTTTCATTGTCTTGGATGATGTGACTACCTCAGAGCAATTAGAAAAACTAATCGAAGATTATGATTTCTGGGAACCAGGAAGTAAGGTCATTGTTACAACTAGAAATAAGCAAATATTTCGACCACATGATAAAATATATCCGGTCCAAGAATTGAGCTCTGATCACTCTCTTCAGCTTTTCTGTTTGACTGCTTTTGGAGAAAAAGAACAGCCTAAAGATGGATATGAAGATCTATCAAGAAGAGTGATTTCCTATTGCCAAGGTATGCCGTTGGCTTTGAAAGTTCTGGGTGCAAGTCTTCGTAGCAAAAGTAAAGAGGCTTGGGAATGCCAATTCAGAAAACTTCAAAAGATTCCAAATATGGAAATTCATAAGGTATTAAAATTAAGTTATGATGGCTTAGATCGTTCTGAGCAGGACATATTTCTAGACATTTCATGCTTCTTCAAAGGACAAACAAGGGGTTATGTAACATGTTTACTGGAAGCTTGTGATTTCTTTCCAGAATCTGGAGTGGAAGTCCTTTTAGATAAAGCTCTCATAGCAATTTCAGATGACAATAAGATAGAAATGCATGACTTGATACAGGAAATGGGTCAGGAAATTGTTCATCAAGAATGTATGAAAGATCCTGGAAGACGAAGTCGATTATGGAGATCCAGTGATGTGCTTGATGTATTGAAAAATAACAAGGTAAGTGGAAGATGA 1077 0.3686 MCSVIIIAGAALGIHNGTDPELLKHIVEDVLQKLPPRFPNQHKGLVGVEENIKQIESLLSKVKILGIWGMGGIGKTTLATALYKKLSHNFEGGCFFSNVREKSDNLKDFCDKSEISKLQGKKVFIVLDDVTTSEQLEKLIEDYDFWEPGSKVIVTTRNKQIFRPHDKIYPVQELSSDHSLQLFCLTAFGEKEQPKDGYEDLSRRVISYCQGMPLALKVLGASLRSKSKEAWECQFRKLQKIPNMEIHKVLKLSYDGLDRSEQDIFLDISCFFKGQTRGYVTCLLEACDFFPESGVEVLLDKALIAISDDNKIEMHDLIQEMGQEIVHQECMKDPGRRSRLWRSSDVLDVLKNNKVSGR 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01881 358 PRINTS Disease resistance protein signature 209 223 - -
Pumo1g01881 358 PRINTS Disease resistance protein signature 64 79 - -
Pumo1g01881 358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 268 IPR027417 -
Pumo1g01881 358 Gene3D - 173 258 IPR042197 -
Pumo1g01881 358 SUPERFAMILY "Winged helix" DNA-binding domain 245 351 IPR036390 -
Pumo1g01881 358 Gene3D - 25 168 IPR027417 -
Pumo1g01881 358 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 350 IPR044974 GO:0006952
Pumo1g01881 358 FunFam Disease resistance protein (TIR-NBS-LRR class) 175 258 - -
Pumo1g01881 358 Pfam NB-ARC domain 114 254 IPR002182 GO:0043531
Pumo1g01881 358 Pfam NB-ARC domain 54 92 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01881 Pumo-Chr1 37935058 37936956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01881 46 352 WRKY Transcription Factor Family AT5G45050 35.135 6.49e-58 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01881 - - gmx:100809480 476.863