Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01875 ATGGCGGAGCAGCAAATCAATGCCATTGATTGTTCCTTTAACTCATTATCTGTGGTGTCTGCTAAAAAATATGACGTTTTTCTAAGCTTTCGAGGTGAGGACACCCGCAGGAACTTCACAAGCCATCTTTATGAAGCATTGAGGCAAAAAAAAGTTGAAACCTTTATAGATGACCGGCTTCAAAAGGGAGATGAAATCTCACCGGCACTCATGAAAGCCATTGAAGATTCTCATGTATCTATTGTCGTTTTCTCAGAGAATTATGCTTTCTCAAAGTGGTGCTTGAGTGAACTCAGCAAGATTCTGGAATGCAAGAAAGGCCAAGGACAGATTGTGATACCAGTATTTTACAACATAGATCCATCCCATGTGAGGAAACAGACAGGGAACTACAAGCAGGCCTTTGCAAAACATGAGGGAGAACTCAGGTGCAACAAATGGAAAGCAGCTCTCACGGAAGTAGCCAATTTTGCTGGGTGGGATTCTCAAACTTATAGGACTGAATCTGAACTCCTTAAGGACATTGTTGGAGATGTTTTGCGAAAATTGACCCCTAGATACCCCAACCAACTTAAAGGACTGATTGGAATTGAAGAAAATTACTTACAGATTGAATCAATACTGAAAATTGGGTCAAGTGAAGTTAGAATCCTTGGAATATGGGGAATGGGTGGCATAGGTAAGACCACCCTTGCTACTGCTTTATATGACAGAATGTCTCATGACTTCGAAGGTCGTTGCTTCGTCGCAAATGTAAGGGAAGAAGCAGACAAGCATGGACTCAAAGCTTTATGTAATAAACTTTTTTCTGAGGTATTAGAGAATGAAAATCACTGTTTTGATGTATCTCAATTTGTCTTGAGTAGGCTTAGGCGTAAAAAAGTTTTCATTGTGTTGGATGATGTGGCTACCTTTGAGCAATTAGAAAATCTAATTGCAGATTATGATTTCTTGGGACCCGGAAGTAGAGTCATGGTTACAACTAGAAATAAGCAAATATTTAGCCAAGTTGATGAAATATATGAGGTCAAAAAATTGAGCTTTAACCACTCTCTTCAGCTTTTCTGTTTAACTGTTTTTAGAGAAAAAGAACCTAAACATGGATATGAAGATCTATCAATAAGTGCAATTTCCTATTGCAAAGGTATTCCTTTGGCTTTAAAAGCTTTGGGTGCTAGTCTTCGCTCAAGAAGTAAAGAGGCATGGGAAAGTGAATTGAGAAAAGTCCAAAAGATTCCTAATATGGAAATTCATAATGTATTAAAATTAAGTTATGATGGCTTAGATCATTCTCAAAAGGACATCTTTCTAGACATTGCATGCTTCTTCAAAGGAGGAAAAAGAGATTGGGTAACAGAATTACTGGAAGCTTTTGGTTTCTTTCCAGCATCAGGGATAGAAGTCCTTTTAGATAAAGTTCTCATAACAATTTATTCTGACAATTGGATAGAAATGCATGACTTGATACAAGAAATGGGTCGGGAAATTGTTCATCAAGAATCTATCAAAGACCCTGGAAGACGAAGTCGATTGTGGAAACATGAGGAAGTTCATGATGTATTGAAATATAACAAGGGAACTGATGTTGTTGAAGGCATAATTTTAGATGTGCATAAATTAACTGGGGATCTATGTTTGAACTCAGACTCCCTTGCAAAGATGAGTAACCTAAGATTTCTACAAATCCATGGTTTGTACATGAACAACAGAGTACACCTTCCTAATGGTCTTGAGTCACTGCCTGATAAATTGAGGTACCTTGGGTGGTATTGTTATTGTCTTGAGTCTTTGCCGACTAACTTTTGTGCTGAACAGCTTGTAGAGCTTCACATGCCTCACAGCAAGCTTAAAAAGCTTTGGGACGGGGTTCAGAATCTTGTGAATTTAAAGACAATTAACCTTTTTTGGTCCGAAGATCTGATTGAGATCCCAGACTTATCTAAGGCAGAAAAACTTGAAAGTGTTTCTCTTTTTCAATGTGAAAGCTTGCGTCAGCTCCATCCATCCATATCATCTGCTCCCAATCTTAAATATTTGAATTTAGATTACTGCAGAGAGATTAAAAGCCTTAACGTTCATTCAAAATCTCTCTGTAAACTTGGTGTCTATGGTTGTTCATCTCTCAAGGAAATCTTAGTGACATCAGAGGAAATTCCGAGATTGTACTTATCTGGCACTGCTATATGCGCATTGTCATCATCAATTGGTCACTTATTGTCTTTACAAGTGTTAGATCTAAGTGGAACTAATGTTGAGAGCTTGCCTGCAAACATCACAAACCTTTCAAAGTTGAGAGAGCTTTGGTTAGAAGATTGCAGGAAACTCGTGTCTCTGCCAGAGCTTCCACCATTTTTGGAATGCATGGTTGCCAGTAATTGCATTTCTCTGGAGACAGACTTAACTCAACTGCTAGTGTTACAACACATGTTACAGAGCATACCCTTCTTACATGAACACCATCCTAGTAATTGGAACAGACGCTATTTCATGTTCCCGGGAGACCACATAACCAACAGCGAGTGTGGATTTCGTACAACAGATAGTTTAATAACTATTCATGATCTTGCAATATCTCACTTGTGTGGTTTCATTTATTGCGTCATTCTTTCTGAGGGACCACCACTCATTGATAACTATATTTTGTGTTCTATCTATCAAGATGGCAGAGAGGTTGCCAGTGACGAGATGGAGATGCCTTACATAAATTTAATTTCAGATCATGTGTTATTTTGGTACCATGACATCAGAAAATTTGAAACAATAAGTAAAGTTTATGATTGTTTCAGCAGAATGACATTTATGTTTGAATTTGAAGACCATCATTTCAGTAAAGAATTTGGAGAACATTATGGCGACAGGGTTGAAATCGATCGAGGGTGTGCAGTGTTCCCAGTATATGCCCCAGAATCGGGGTTGAAGCTGTTCAGTAGTAGTAGCAAGGAAATTTTTCAATGCGAATCCATTACCCAAATTTCTGATGATGACTCACAGCCCGGAACAATTGGAGTTGCAGGCTCTAATAATGAAAATGAAAATGACTGGGAAGTGGGAACAACTTCTACCCGTATGGAAGTGGTGGAGAACTTTGCCTGA 3093 0.3847 MAEQQINAIDCSFNSLSVVSAKKYDVFLSFRGEDTRRNFTSHLYEALRQKKVETFIDDRLQKGDEISPALMKAIEDSHVSIVVFSENYAFSKWCLSELSKILECKKGQGQIVIPVFYNIDPSHVRKQTGNYKQAFAKHEGELRCNKWKAALTEVANFAGWDSQTYRTESELLKDIVGDVLRKLTPRYPNQLKGLIGIEENYLQIESILKIGSSEVRILGIWGMGGIGKTTLATALYDRMSHDFEGRCFVANVREEADKHGLKALCNKLFSEVLENENHCFDVSQFVLSRLRRKKVFIVLDDVATFEQLENLIADYDFLGPGSRVMVTTRNKQIFSQVDEIYEVKKLSFNHSLQLFCLTVFREKEPKHGYEDLSISAISYCKGIPLALKALGASLRSRSKEAWESELRKVQKIPNMEIHNVLKLSYDGLDHSQKDIFLDIACFFKGGKRDWVTELLEAFGFFPASGIEVLLDKVLITIYSDNWIEMHDLIQEMGREIVHQESIKDPGRRSRLWKHEEVHDVLKYNKGTDVVEGIILDVHKLTGDLCLNSDSLAKMSNLRFLQIHGLYMNNRVHLPNGLESLPDKLRYLGWYCYCLESLPTNFCAEQLVELHMPHSKLKKLWDGVQNLVNLKTINLFWSEDLIEIPDLSKAEKLESVSLFQCESLRQLHPSISSAPNLKYLNLDYCREIKSLNVHSKSLCKLGVYGCSSLKEILVTSEEIPRLYLSGTAICALSSSIGHLLSLQVLDLSGTNVESLPANITNLSKLRELWLEDCRKLVSLPELPPFLECMVASNCISLETDLTQLLVLQHMLQSIPFLHEHHPSNWNRRYFMFPGDHITNSECGFRTTDSLITIHDLAISHLCGFIYCVILSEGPPLIDNYILCSIYQDGREVASDEMEMPYINLISDHVLFWYHDIRKFETISKVYDCFSRMTFMFEFEDHHFSKEFGEHYGDRVEIDRGCAVFPVYAPESGLKLFSSSSKEIFQCESITQISDDDSQPGTIGVAGSNNENENDWEVGTTSTRMEVVENFA 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01875 1030 Gene3D - 20 184 IPR035897 -
Pumo1g01875 1030 Pfam Leucine Rich Repeat 605 624 IPR011713 -
Pumo1g01875 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 439 IPR027417 -
Pumo1g01875 1030 Pfam TIR domain 23 189 IPR000157 GO:0007165
Pumo1g01875 1030 SUPERFAMILY Toll/Interleukin receptor TIR domain 20 160 IPR035897 -
Pumo1g01875 1030 SMART till_3 23 157 IPR000157 GO:0007165
Pumo1g01875 1030 PRINTS Disease resistance protein signature 217 232 - -
Pumo1g01875 1030 PRINTS Disease resistance protein signature 289 303 - -
Pumo1g01875 1030 PRINTS Disease resistance protein signature 736 752 - -
Pumo1g01875 1030 PRINTS Disease resistance protein signature 380 394 - -
Pumo1g01875 1030 ProSiteProfiles TIR domain profile. 22 183 IPR000157 GO:0007165
Pumo1g01875 1030 Gene3D - 345 429 IPR042197 -
Pumo1g01875 1030 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 795 IPR044974 GO:0006952
Pumo1g01875 1030 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 185 - -
Pumo1g01875 1030 SUPERFAMILY L domain-like 485 836 - -
Pumo1g01875 1030 Gene3D - 185 343 IPR027417 -
Pumo1g01875 1030 Gene3D Ribonuclease Inhibitor 534 716 IPR032675 -
Pumo1g01875 1030 Gene3D Ribonuclease Inhibitor 717 823 IPR032675 -
Pumo1g01875 1030 Pfam NB-ARC domain 210 411 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01875 Pumo-Chr1 37310310 37314517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01875 20 788 WRKY Transcription Factor Family AT4G12020 34.347 4.17e-114 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01875 - - gmx:100793798 1258.82