Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01859 ATGAATAGGCTTCGACGTAAAAAAGTTTTCATTGTGTTGGATGATGTGGATACCTCAGAGCAATTAGGAAAACTAATTGTAGAATTTGATTTCTTGGGGCCTGGAAGTAGAGTCATTGTTACTACTAGAAATAAGCAAATACTTAGCCCAATTGAAGAAATATATCAGGTGAAGGAATTGAGCTTTGATCACTCTCTTCAACTTTTCTGTTTGACTGTTTTTGGTGAAAAACAACCTAAAGATGGATATGAAGATCTATCAAGAAGAGCAATTTCCTATTGCAAAGGTATTCCTTTGGCTATAAACATTTTGGGTGCAACTCTTCGTTCAAGAATTAAAGAAGCCTGGGAATGCGAATTGATAAAACTTGAGGGAGAAACTGAGTGGAGCAAATGGAAAGCATCTCTCACTGAAGCAGCCAATTTAGTTGGGTGGGACTCTCCAACTTATAGGATTGAATCAGAATTCATTGACAATGTTTTTGAAGAAGTTTCACAAAATTTGGCTCCTAGATACTATAAAAAATATGACGTTTTTCTAAGCTTCCGAGGTGAGGACACCCACTGGAACTTCACAAGCCATCTATATCAAGCTTTGAATGATGAGAAAGTCAAAACCTATATAGACGACCAGGTTGAAAAAGGAGATGAAATCTCACCGGCACTCATCAGAGCCATCGAAGATTCTCATGTATCTATTGTCATCTTCTCAAAGAACTATGCTTCTTCAAAGTGGTGCTTAGGTGAACTCAGCAAGATTCTGGAATGCCAGAAAGTCCAAGGGCAGATTGTGATACCAATGTTTTACGACATAGATTCATCCCATGTGAGGAAGCAGACTGGAAGCTACGAGCAAGCCTTTGCAAAACACAAGGGAGATCCCCGGTGCAACAAATGGAAAGCTGCTCTCACTGAAGCAGCAAATTTAGCTGGGTGGGACTCTCAAATATACAGGACTGATTTTGAATTACTTAAAGACATTGTTGGAGATGTGTTGCAAAAGTTGCCTCCTAGATATCGAAACCAGCATAAGGGACTGATTGGAATTGAGGAACATTGTAAACAGATTGAATCATTACTTAAATTTGGGTCAAGTGAAATTATAACTCTTGGAATATGGGGCATGGGTGGCATTGGTAAGACCACCCTTGCCACTGCTTTATATGACAGACTGTCTTATGAGTTTGAAGGTCGTTGTTTCCTCACAAATGTAAGGGAAAAATCAGACAAGCTGGAAGCTTTACGTGATCAGCTTTTTTCTAAGTTACTAAAGAAGGAAAATCATGGTTTTGATAATTTTGACATGAGTAGGCTTCGACGTAAGAAGGTTTTCATTGTTCTTGATGATGTAGCTACCTCAGAGCAATTTGAAAAACTAATTGTAGAATATGATTTCTTAGGAGCAGGAAGTAGAGTCATTGTTACAACCAGAAATAGGCAAATACTTGACCCAGTTGATGAAATATATCAAATGCAAGAGTTGAGCTCTCATGATTCTCTTCAGCTTTTTTGTTTGACTGTTTTTGGAAAAAAAACAAGCTAA 1542 0.3807 MNRLRRKKVFIVLDDVDTSEQLGKLIVEFDFLGPGSRVIVTTRNKQILSPIEEIYQVKELSFDHSLQLFCLTVFGEKQPKDGYEDLSRRAISYCKGIPLAINILGATLRSRIKEAWECELIKLEGETEWSKWKASLTEAANLVGWDSPTYRIESEFIDNVFEEVSQNLAPRYYKKYDVFLSFRGEDTHWNFTSHLYQALNDEKVKTYIDDQVEKGDEISPALIRAIEDSHVSIVIFSKNYASSKWCLGELSKILECQKVQGQIVIPMFYDIDSSHVRKQTGSYEQAFAKHKGDPRCNKWKAALTEAANLAGWDSQIYRTDFELLKDIVGDVLQKLPPRYRNQHKGLIGIEEHCKQIESLLKFGSSEIITLGIWGMGGIGKTTLATALYDRLSYEFEGRCFLTNVREKSDKLEALRDQLFSKLLKKENHGFDNFDMSRLRRKKVFIVLDDVATSEQFEKLIVEYDFLGAGSRVIVTTRNRQILDPVDEIYQMQELSSHDSLQLFCLTVFGKKTS 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01859 513 Gene3D - 59 137 IPR042197 -
Pumo1g01859 513 Gene3D - 337 491 IPR027417 -
Pumo1g01859 513 Gene3D - 1 57 IPR027417 -
Pumo1g01859 513 SMART till_3 175 309 IPR000157 GO:0007165
Pumo1g01859 513 PRINTS Disease resistance protein signature 369 384 - -
Pumo1g01859 513 PRINTS Disease resistance protein signature 437 451 - -
Pumo1g01859 513 SUPERFAMILY Toll/Interleukin receptor TIR domain 174 312 IPR035897 -
Pumo1g01859 513 FunFam Disease resistance protein (TIR-NBS-LRR class) 172 336 - -
Pumo1g01859 513 Gene3D - 172 336 IPR035897 -
Pumo1g01859 513 ProSiteProfiles TIR domain profile. 174 335 IPR000157 GO:0007165
Pumo1g01859 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 124 IPR027417 -
Pumo1g01859 513 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 176 510 IPR044974 GO:0006952
Pumo1g01859 513 Pfam NB-ARC domain 2 124 IPR002182 GO:0043531
Pumo1g01859 513 Pfam NB-ARC domain 356 511 IPR002182 GO:0043531
Pumo1g01859 513 Pfam TIR domain 175 343 IPR000157 GO:0007165
Pumo1g01859 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 511 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01859 Pumo-Chr1 36123088 36125274 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01859 164 503 WRKY Transcription Factor Family AT4G12020 28.895 1.61e-34 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01859 - - gmx:100809480 509.22