Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01857 ATGGATGAGCAGCAAAGGATCAGTGTTGTTTCTTCTTCCTCTAACTCTTCTTCTATGGTGTCTTCTAAAACATATGATGTTTTTCTAAGCTTTCGAGGTGAAGACACCCGTAGGAACTTCACAAGCCATCTATATAAAGCTTTGAATGAAAAGAAAGTCAAAACCTATATAGATGACAATCTTGAAAAGGGAGATGAAATCTCACCAGCACTCATCAAAGCCATCGAAGATTCTCATGTATCTATTGTTATCTTCTCAGAGAACTATGCTTCCTCAAAATGGTGCTTGGGTGAACTCAGCAAGATTCTGGAATGCCAGAAAGAAAAAGGACTGATTGTGATACCTGTATTCTACAACATTGATCCATCCGATGTGAGGAAGCAGGCTGGGAGCTACGAGCAAGCCTTTGCAGAACATGAAGGAGAACCCAGCTGCATCGAATGGAAAGATGCTCTCACTAAAGCTGCCAATTTAGCTCGGTGGGACTCTCGAACTTACAGGACTGATCCTGAATTACTTAAGGACATTGTTGAAGGTGTTTTACAGAAGTTGCCTCCTAGATTCCCAAACCAACCTAAAGGAATGGTTGGAATTCAGGAAAATATTAAACATATTGAATCATTACTAAGTGAAGTTAAAATCCTTGGAATATGGGGCATGGGTGGCATAGGTAAGACCACCCTTGCTACTGCTTTATATAACAAACTGTCTGATAATTTTGAAGGTCATTGCTTCCTCACAAATGTAAGGGAAAAATCAGACAATCTTAAAGATTTTTGTGACGAGATAAGAAACCTTCGAGGTAAAAAAGCTTTCATTGTCTTGGATGATGTGGCTACCTCAGAGCAATTAGAAAAACTAATCAAAGATTATGATTTCTGGGAACTAGGAAGTAAGGTCATTGTTACAACTAGAAATAAGCAAATATTTCGACCACATGATAAAATATATCCGGTCCAAGAATTGAGCTCTGATCACTCTCTTCAGCTTTTCTGTTTGACTGCTTTTGGAGAAAAAGACCAGCCTAAAGATGGATATGAAGATCTATCAAGAAGAGTGATTTCCTATTGCCAAGGTATTCCTTTGGCTTTGAAAGTTCTGGGTGCAAGTCTTCGTGGAAGAAGTAAAGAGGCATGGGAATGCCAATTAAGAAAACTCCAAGAGATTCCAAAAATGCAACTTCTTAATGTATTAAAATTAAGTTATGATGGCATAGATGATTATGAAAAGAACATATTTTTAGACATTGCGTGCTTCTTCAAAGGAGAAAACAAGGATTGGGTAACAAGAGTACTGGAAGCTTTTGATTTCTATCCAGTTGATGGGATAGAAGCTCTATTAGATAAAGCTCTCATAAGAATATCACATTCGGGAGAGATAGAAATGCATGACTTGATACAAGAAATGGGTCAGCAAATCGTTCATCAAAAATCTAAAGACCCAGGAAGACGAAGTCGATTGTGGAGATCTAATGACGTGCTTTATGTATTGAAAAATAACAAGGGAACTGATGTTGTTGAAGGCATAATTTTAGATTTATATACATTAACTGAGGATCTATATTTGAGCCCCAGTTCCCTTGCAAAGATGACTAAGCTCAGATTTCTTCAAATCCATAGAGGGTACTGGAGAGAGAACAGATTTGAAGTGTATCTTCCAAATGGTCTCGACTCATTGTCTAATGAATTGAGGTACCTTCACTGGGATAGCTTCTCTCTTGAGTCTTTGCCGCCTAACTTTTGTGCAGAACAACTTGTAATGCTTCACATGACTCACAGCAAGCTTAAAAAGCTTTGGGATGGGGTTCAGAATCTTGTGAATTTAAAGACAATTAACCTTTATGGATCACGAGACCTGATTGAGATCCCAGACTTATCTAAGGCAGAACAACTTGAAAGTGTCTGTCTTGTTGAATGTGAAAAATTGCATCAGTTCCATCCATCCAAGTTATCTTTCCCCAAGCTTACATATGTGGATTTACAACGCTGCAGAGAGATTGAAAGCATCAATGTTCATTCAAAATCTCTAAGTGAAATTCTTGTCATTGGTTGTTTCTCTCTGAAGGAATTCTCAGTGACATCAGAGAGAATGACGCAATTAGACTTGTCTCACACTGCTATACATGCATTATCGTCATCAATGTTATCTCTCCCCAAGCTTACAATTTTGTGTTTAAATGGCTGCAAAAGGATTGAGAGGGTTGATGTTCATTCAAAATATCTCTGTGTATTGAGACTTAATGGTTGTTCATCTCTCAAGGAAATCTCATTGACATCAGAGGAAATAACAGAGATGGACTTATCTCACACCGATATAAGTGCATTGATGTCATCAATATTACCTCTCCCCAAGCTTACAAATTTGCGTTTAAGAGGTTGCAAAAGGATTCAGAGGGTTGATGTTCATTCAAAATCTCTCTGTAAACTTGATCTTTATGGTTGCTCATCTCTCAAGGAAATCTCAGTGACATCTGAGGAAATAACTGAATTGGACTTATTTGGCTGCAGAGAGGTTGAAAGCCTAATTTTTCATTCGAAATCTCTCTGTGTACTTAATCTTGGTGGTTTATCATCTCTAAGGGAGATCACAGTGACATCAGAGAAAATGTGGAATTTGAAGTTATCTCACGCAGATATACGTGCATTGCCGTCATCAATTGGTGACTTATTGTCTATAGAAGTGTTAGACCTAAGTGGAACTAATGTTGAGATCTTACCAGCAAATGTCAAAAACCTTTCAATGTTGAGAGAGCTTTGGTTAAATGATTGCAAGAAACTCATGTCTCTGTCAGAGCTTCCACCATCCCTGGAAGAGCTTGGGTTAGAAAATTGCTGGGAACTCACATCTCTGCCAGAGCTTCCGCCATCCCTGAAAAACCTTTGGTTAGATGATTGCAGGAAACTCGTTTGTCTGTCGAAGCTTCCACTTACCATGTCTGTGGTGAGAGCCTTGAACTGCATTGCTCTGGGGACAGAGATCACTCAACGGTTAGTGTTACAACACATGTTACAGAGCCGCATACCCTACTTACACCAACAATATTTTAATAATCATATTCCTATGTATTCTCATGATGGGTATTTCATTTTCCCGGGAGACAATGTCACCAACAGCGAGTGTGGGTTTCATACAACAAAGAGATCAATAACTATTCCTTATCTTCCAAAATCTCACTTGTGTGGTTTCATTTATTATTGCATCATTCTTTCTGAGGGACAACATTTAAATGTTTGGGATGATGATGGTTTGGATGATGATGATTGGGATGATGATGTTAGGGAAGATTTTGTTTCGGTTTATATCCATCAAGATGACATAGAGGTCTGCTGGGGAACCATCTGTATAGAATACGGCAGTTTAATTTCAAAACACGTGGTCTTTTCATATGTTGATGTCAACCAATTTGACAGAATAAGTGAAGCGTGTGATCATTTCAACAACATAACATTTAAATTTGAAAGGGAATTCTTTAAGGAGAAAATAAAAGGGTGTGGGGTCTTCCAAGTATATGCCACAGCATCGGGGTTGAAGCTGGTGAGTAGTAGCAAGAAAATTGGAATTGGAGTTGGAGTCTCTAATAATGAAAATGAACAAGACCCAGAATAA 3606 0.3833 MDEQQRISVVSSSSNSSSMVSSKTYDVFLSFRGEDTRRNFTSHLYKALNEKKVKTYIDDNLEKGDEISPALIKAIEDSHVSIVIFSENYASSKWCLGELSKILECQKEKGLIVIPVFYNIDPSDVRKQAGSYEQAFAEHEGEPSCIEWKDALTKAANLARWDSRTYRTDPELLKDIVEGVLQKLPPRFPNQPKGMVGIQENIKHIESLLSEVKILGIWGMGGIGKTTLATALYNKLSDNFEGHCFLTNVREKSDNLKDFCDEIRNLRGKKAFIVLDDVATSEQLEKLIKDYDFWELGSKVIVTTRNKQIFRPHDKIYPVQELSSDHSLQLFCLTAFGEKDQPKDGYEDLSRRVISYCQGIPLALKVLGASLRGRSKEAWECQLRKLQEIPKMQLLNVLKLSYDGIDDYEKNIFLDIACFFKGENKDWVTRVLEAFDFYPVDGIEALLDKALIRISHSGEIEMHDLIQEMGQQIVHQKSKDPGRRSRLWRSNDVLYVLKNNKGTDVVEGIILDLYTLTEDLYLSPSSLAKMTKLRFLQIHRGYWRENRFEVYLPNGLDSLSNELRYLHWDSFSLESLPPNFCAEQLVMLHMTHSKLKKLWDGVQNLVNLKTINLYGSRDLIEIPDLSKAEQLESVCLVECEKLHQFHPSKLSFPKLTYVDLQRCREIESINVHSKSLSEILVIGCFSLKEFSVTSERMTQLDLSHTAIHALSSSMLSLPKLTILCLNGCKRIERVDVHSKYLCVLRLNGCSSLKEISLTSEEITEMDLSHTDISALMSSILPLPKLTNLRLRGCKRIQRVDVHSKSLCKLDLYGCSSLKEISVTSEEITELDLFGCREVESLIFHSKSLCVLNLGGLSSLREITVTSEKMWNLKLSHADIRALPSSIGDLLSIEVLDLSGTNVEILPANVKNLSMLRELWLNDCKKLMSLSELPPSLEELGLENCWELTSLPELPPSLKNLWLDDCRKLVCLSKLPLTMSVVRALNCIALGTEITQRLVLQHMLQSRIPYLHQQYFNNHIPMYSHDGYFIFPGDNVTNSECGFHTTKRSITIPYLPKSHLCGFIYYCIILSEGQHLNVWDDDGLDDDDWDDDVREDFVSVYIHQDDIEVCWGTICIEYGSLISKHVVFSYVDVNQFDRISEACDHFNNITFKFEREFFKEKIKGCGVFQVYATASGLKLVSSSKKIGIGVGVSNNENEQDPE 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01857 1201 Gene3D - 185 316 IPR027417 -
Pumo1g01857 1201 Pfam Leucine Rich Repeat 585 603 IPR011713 -
Pumo1g01857 1201 Gene3D - 321 406 IPR042197 -
Pumo1g01857 1201 Gene3D Ribonuclease Inhibitor 697 862 IPR032675 -
Pumo1g01857 1201 Gene3D Ribonuclease Inhibitor 467 696 IPR032675 -
Pumo1g01857 1201 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 159 IPR035897 -
Pumo1g01857 1201 Pfam TIR domain 25 190 IPR000157 GO:0007165
Pumo1g01857 1201 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 185 - -
Pumo1g01857 1201 Pfam NB-ARC domain 260 388 IPR002182 GO:0043531
Pumo1g01857 1201 Pfam NB-ARC domain 208 246 IPR002182 GO:0043531
Pumo1g01857 1201 SUPERFAMILY L domain-like 520 863 - -
Pumo1g01857 1201 SUPERFAMILY "Winged helix" DNA-binding domain 394 498 IPR036390 -
Pumo1g01857 1201 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 734 IPR044974 GO:0006952
Pumo1g01857 1201 SMART till_3 24 158 IPR000157 GO:0007165
Pumo1g01857 1201 Gene3D Ribonuclease Inhibitor 863 996 IPR032675 -
Pumo1g01857 1201 PRINTS Disease resistance protein signature 801 817 - -
Pumo1g01857 1201 PRINTS Disease resistance protein signature 214 229 - -
Pumo1g01857 1201 PRINTS Disease resistance protein signature 357 371 - -
Pumo1g01857 1201 SUPERFAMILY L domain-like 811 972 - -
Pumo1g01857 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 416 IPR027417 -
Pumo1g01857 1201 ProSiteProfiles TIR domain profile. 23 184 IPR000157 GO:0007165
Pumo1g01857 1201 Gene3D - 21 184 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01857 Pumo-Chr1 36094404 36107193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01857 762 991 WRKY Transcription Factor Family AT5G45050 24.793 1.34e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01857 - - ccaj:109806118 1126.69