Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01853 ATGGCTGAGCAACAAATGATCAACTCCATCGCTTCTTCCTCTAACTCATCTATGGTGTCTATGAAAAAATATGATGTTTTTCTAAGCTTTCGAGGTGAGGACACCCGCAGGAACTTCACAAGCCATCTTTATGAAGCGTTGATGCAAAAGAAAGTTGAAACCTACATAGACAACCAGCTTGAAAAGGGAGATGAAATCTCACTGTCACTCATCAAAGCCATTGAAGATTCTCATGTATCTGTTGTCATCTTCTCAGAGAACTATGCTTCCTCAAAATGGTGCTTGGGCGAACTCAGCAAGATTATGCAATGCAAGAAAGAAAAAGGACAGATTGTGATACCGGTGTTTTACAATATAGATCCATCCCATGTGAGGAAGCAGACTGGGAGCTATGAGCAAGCCTTTGCAAAACATGAGGGAGAATCCAGTTGCAACAAGTGGAAAGCTGCTCTTACTGAGGCTGCCAATTTAGCTGGGTGGGACTCTCAAACTTACAGGACTGAGCCTGAATTCCTTAAAGACATCGTTGATGATATATTAAAAAAATTGGCTCCAAGATACCCAAACCAGCGCAAAAGACTGGTTGGAATTGAGGAAAGTTATGAACAGATTGAATCATTACTTAAAATTGGGTCAAGTGAAGTTAAAACCCTTGGATTATGGGGCATGGGTGGCATAGGTAAGACCACCCTTGCTACAGCTTTATATGACAAATTGTCTTATGAGTTTGAAGGTCGTTGCTTCCTCAAAAATGTAAGGGAAAAATCAGAGAAACTTGAAGCTTTACGTGATGAACTTTTTGAAAGTTGTGGTTTTGATAAATTTAACATGAGTAGGCTTCGATGTAAAAAAGTTTTCATTGTGCTGGATGATGTTGATACCTCAGAGCAACTAGAAAAACTAATTGAAGAGTATGATTTCTTGGGGCCAGGAAGTAGAGTCATTGTTACAACTAGAAATAAGCAAATACTTCCAGACGATGAAATATATCCAGTCCAGGATTTGAGCCCTCATCACGCTCTTGAGCTATTCTGTTTGGCTGCTTTCAGAGAAAAGAAACCTAAAGATGGATATGGAAATCTATCAAGAAAAGTAGTTTCTCTTTGCAAAGGTCTTCCTTTGGCTTTAAAAGTTTTGGGTGCAAGTCTTCATAAAAGAAGTAAAGAGGCATGGGAAAGTGAATTGAGAAAACTCCAAAAGATTCCAAATATGAAAATTCTTAATATACTAAAATTAAGTTATGATGGCTTAGATCATTCTGAAAAGGATGTATTTTTAGACATTGCATGCTTTTTCAAAGGAGAACGCATAGATAGGGTAACATCTCTACTGGAAGCTTGTGATTTCTTTGCAGCATTTGGGATAGAAGTTCTTTTAGATAGAGCTCTCATAACAATTTCATATGGCAATAGGATAGAAATGCATGACTTGATACAGGAAATGGGTCGAGAAATTGTTCATCAAGAATCTGTCGAAGACCCTGGTAGACAAAGTCGATTGTGGAAACATGACAAAGTGCTTGATGTGTTGAAATCTAATACGGGAACTAATGTTGTTGAAGGCATAATTTTCGATTTGGATAAACTAAATGAGGATTTATATTTGAGCTCTGAATCCCTTGCAAAGATGACTAAACTGAGATTTCTTCAAATTGATGGATCGTACCAGAGTAACTCATTTAATGTGTACTTTCCTAAAGGTCTTGAGTCATTGTCTGATAAATTGAGGCTTCTCCACTGGGATGAATGCTCTCTTGAGTCTTTTCCAACTAACTTTTGTGCTGAACAGCTTGTAGAGCTTTGCATGATTGGTAGCAAGCTTAAAAAGCTTTGGGACGGGGTTCAGAATCTTGTTAATTTAAAGTTAATTAACCTTGAAGACTCCCGAGACCTAATTGAGATCCCAAACTTATCTAAGGCAGAAAAACTTGAATATTTGGATTTAGGGTATTGCACAAAACTTGAAAGCCTTAATGTTGATTTGAAATCTCTCAGTGGTCTTTGTCTCAATGATTGTTCATCTCTCAAGAAAATCTCTGTGACATCTGAGAAAATGACAAAATTGAACTTATCTGGCTGCGAAAAGATTGAAAGCCTTAATGTTGATTCGAAATCTCTTAGTGAAGTTTGTCTCGATGATTGTTCATCTCTCAAGGAATTTTCAGTGACATCTGAGAAAATGACAGTATTGGACATATCTGGCTTCGGAGAGATTAAAAGCCTTAATCTTAATTTAAAATCTCTCCATCAACTTGATCTCTATGATTGTTCATCTCTCAATGAAATCTCAATGACATCAAAGGAAATTACGTGGTTGAACTTATCTGGGACTGCTATATGTGCATTGGCACCACTAATTGTTCACTTGTTGTCTTTAGAAGGGTTAGACCTAAGTGGAACTGATGTTGAGAGCTTGCCTACAAACATAAAAAACCTTTCAATGCTGAAAAGGCTTTATTTAGATGATTGCTTGAAACTTGTGTCTCTGCCGGAGCTTCCACCATCCCTGAAATACCTTTATTTAACTAATTGCAGGAAACTCGCCTCTCTGCCGAAGCTTCCACCATCTTTGAGAGAGCTTTATTTAAATGATTGCAGAGAACTTGTGTCACTACCGAAGCTTCCTCCATCCATTGAAAAGTTGAGTGCCTTGAACTGCACCCCTCTAAAGACAGAGACCACTCAACGTCTAGAGTTACATGACATGTTACTGAGTTGCCTACCCTACTTACACCAACAATATCAAAATAATCTCGACTATTTTGACAATGGGTATGTCATTTTCCCGAGAGGCCATGTCACCGACAAGCATGGGTTTCTTACAGAAAAGACTTCAATAACTATTCCTTATCTTCCAAAGTCTAACTTGTTCGGTTTCATTTTTTGCATCATTCTTTCGGAGGGCCCATCTGAATATTCTTTGGCTTCTTACTCTATCTATCAAGATGGCATACAGGTTGACTCGATCCACAGGTTTATAGGTGGCAAAAATTTAATTTCAGATCACATGTTATTTTGGTATTCTCATGTCAGCATATTTGAGAGAACAAGTCACCTGTGTGATCATTTCAGTCACATGTCAGTTGTATTTGAATTTCAATACTATGACCGCGACGAGTTTAGACGCAGTCAAGATAGGATAAAGGGATGTGGGGTCTTTCCATTATATGCCTCAGAATTGGGATTGAAGTTGTTTGATAGTAGTAGCAAGGAAATTCTTGAACGGGAATCCGACACCCGTAAAAACTTCACAAGTCATCTTCATGAAGCTTTGATGCAAAAGAAAGTTGAAACCTATATAGACTATTGGCTTAAAAAGGGAGATGAAATCTCACCAGCACTCATCAAAGCCATCAAAGATTCTCATGTATCGGTTGTCATTCTCTCGGAGAACTATGCTTCCTCAAAATGGTGCTTGGAAGAACTCAACAAGATTCTAGAATGCAAGAAAAATTTTGGACAAATAGTGATACCCATATTCTACAACATAAATCCATCCCACCTAAGGAAGCAAATTGGCAGTTATGAGCAAGCCTTTTCAAAACACAAGGAACAACCAAAGTGCAACAAATGGAAAGTTGCTCTCACCAAAGTAGCCAATTTAGTTGGGACTGAATCTGAACTCCTTAAGGACATTGTTGGAGACATTTTGCAAAAACTGACTCCTAGATATCCAAACCAACTTGAAGGACTGGTTGGAATTCAGGACAATTTTGAACAGATTGAATCATTACTAAAAATTGGGTCAACTGATGTTAGAACAATTGGAATATGGGGCATGGGCGGCATAGGAAAGACAACCATTGCTACTGCTTTTTATGCCAAATTGTCTCCTGAGTTCAAAGTTGGTTGCTTCCTGGCAAATGTAAGGGAAAATTCAAGCACGCATGATGGACTCGAAGCTTTATGTAATAAACTTTTTTCAAAGTTGTTAGAGAATGAAAATCACTGTTTTGATGCACCCTTTTTTGTACCTGATTTTGTCATGCGCAGGCTTCGACATAAAAAGGTTTTCATTGTGTTGGATGATGTGGCTACTTTACAACAATTACAATATCTAATTAAAGATTATAATTTGTTGGGACCAGGAAGGAGAGTCATTGTTACAACTAGAGATAAGCAAATTTTTGGATCAGTTGATGAAGTATATGAGGTCAAGGAATTTAGTTTTGATCAATCTCTTCAGCTTTTATGTTTAACTGTTTTTGAAGAAAAACAACCTAAAGATGGATATGAAAATCTATCAAGAAGTGCAATTTCATATTGCAAAGATATTCCTTTGGCTTTAAAAGTTTTGGGTGCCAATCTTTGTCAAAGAAGTAAAAAGGCATGGGAAAGTGAATTGAGAAAGTTCCAAGAGATTCTAAATATGGATATTCACAACATATTAAAATTAAGTTATGATAGCTTAGATCGTTCTCAAAAGGACATCTTTTTAGACATTACATGCTTCTTCAAAGGAGAAGCAAGAGATCTTGTAACGAGTCTAATGGAAGCTTGCGATTTCTTTGCAGCATCTGGAATAGAAGTCCTGTTAGATAAAGCTCTCATAACAAATTCATTTCATAATCGGATCGAAATGCATGACTTGATACAGGAGATGGGTCGGGAAATTCTTCTTCAAGAATCGATCAAAGACCCTGGAAGACGAAGTCAATTATGGAAACCTGAGGAAGTGCGTGAAGTATTGAAAAACAAGGGAACCAATGTTGTTGAAGGCATAATTTTAGATTTGGATACATTATCAGGGAATCTATGTTTGAGCTCTGATTCCCTAGCAAAGATGACTAACATGAGATTTCTAAAAATCCATAGACGGTACCAATATAGGCAGAGTAGTGAACAATTTAATGTGTACCTTCTTAATGGTCTCGAGTCATTGTCTGATAAATTGAGGTACCTATGTTGGGATGGATTCTGTCTCGAGTCTTTGCCTTCTAACTTTTGTGCTGAACAGCTTGTAGAGCTTCACATGCCTGATAGCAAGAATCTTGTTAATTTAAAGGAAATTTACCTTCTGGGCTCCCGAGACCTAATTGAGATCCCAGACTTATCCAAGGCAGAAAAACTTGAGACTGTTGTTCTTGCGGATTATGCAAGCTTGTGTCAGCTCCATTCATCCTTGTCATCTCTCCCCAAGCATCTTTATGACCATTCTGGGAGCATGCAGCAGAGAGCATCAAATCTGTCATGGTTAGAATCACTCATTCACAACATTGGCCACTTTTGGTTTCTAGCAGAGTTAGACTTGCGTGGAACCAATGTTGAGAGCTTCCTTGTAAACATAAAAAACCTTTCATTGTTGACAAGTCTTTGGTTAGATGATTGCACGAAACTCGTGTCTCTACCGGAGCTTCCACTATCCCTGGAACGACTTTGGTTAGATGATTGCAAGAAACTCGTGTCTCTCCCATCGGAGCTCCCACCATCCCTAAATGACATGAGTGCCTGCAACTGCACTTCTCTGAAGACAGACTTTGCTTGA 5484 0.3809 MAEQQMINSIASSSNSSMVSMKKYDVFLSFRGEDTRRNFTSHLYEALMQKKVETYIDNQLEKGDEISLSLIKAIEDSHVSVVIFSENYASSKWCLGELSKIMQCKKEKGQIVIPVFYNIDPSHVRKQTGSYEQAFAKHEGESSCNKWKAALTEAANLAGWDSQTYRTEPEFLKDIVDDILKKLAPRYPNQRKRLVGIEESYEQIESLLKIGSSEVKTLGLWGMGGIGKTTLATALYDKLSYEFEGRCFLKNVREKSEKLEALRDELFESCGFDKFNMSRLRCKKVFIVLDDVDTSEQLEKLIEEYDFLGPGSRVIVTTRNKQILPDDEIYPVQDLSPHHALELFCLAAFREKKPKDGYGNLSRKVVSLCKGLPLALKVLGASLHKRSKEAWESELRKLQKIPNMKILNILKLSYDGLDHSEKDVFLDIACFFKGERIDRVTSLLEACDFFAAFGIEVLLDRALITISYGNRIEMHDLIQEMGREIVHQESVEDPGRQSRLWKHDKVLDVLKSNTGTNVVEGIIFDLDKLNEDLYLSSESLAKMTKLRFLQIDGSYQSNSFNVYFPKGLESLSDKLRLLHWDECSLESFPTNFCAEQLVELCMIGSKLKKLWDGVQNLVNLKLINLEDSRDLIEIPNLSKAEKLEYLDLGYCTKLESLNVDLKSLSGLCLNDCSSLKKISVTSEKMTKLNLSGCEKIESLNVDSKSLSEVCLDDCSSLKEFSVTSEKMTVLDISGFGEIKSLNLNLKSLHQLDLYDCSSLNEISMTSKEITWLNLSGTAICALAPLIVHLLSLEGLDLSGTDVESLPTNIKNLSMLKRLYLDDCLKLVSLPELPPSLKYLYLTNCRKLASLPKLPPSLRELYLNDCRELVSLPKLPPSIEKLSALNCTPLKTETTQRLELHDMLLSCLPYLHQQYQNNLDYFDNGYVIFPRGHVTDKHGFLTEKTSITIPYLPKSNLFGFIFCIILSEGPSEYSLASYSIYQDGIQVDSIHRFIGGKNLISDHMLFWYSHVSIFERTSHLCDHFSHMSVVFEFQYYDRDEFRRSQDRIKGCGVFPLYASELGLKLFDSSSKEILERESDTRKNFTSHLHEALMQKKVETYIDYWLKKGDEISPALIKAIKDSHVSVVILSENYASSKWCLEELNKILECKKNFGQIVIPIFYNINPSHLRKQIGSYEQAFSKHKEQPKCNKWKVALTKVANLVGTESELLKDIVGDILQKLTPRYPNQLEGLVGIQDNFEQIESLLKIGSTDVRTIGIWGMGGIGKTTIATAFYAKLSPEFKVGCFLANVRENSSTHDGLEALCNKLFSKLLENENHCFDAPFFVPDFVMRRLRHKKVFIVLDDVATLQQLQYLIKDYNLLGPGRRVIVTTRDKQIFGSVDEVYEVKEFSFDQSLQLLCLTVFEEKQPKDGYENLSRSAISYCKDIPLALKVLGANLCQRSKKAWESELRKFQEILNMDIHNILKLSYDSLDRSQKDIFLDITCFFKGEARDLVTSLMEACDFFAASGIEVLLDKALITNSFHNRIEMHDLIQEMGREILLQESIKDPGRRSQLWKPEEVREVLKNKGTNVVEGIILDLDTLSGNLCLSSDSLAKMTNMRFLKIHRRYQYRQSSEQFNVYLLNGLESLSDKLRYLCWDGFCLESLPSNFCAEQLVELHMPDSKNLVNLKEIYLLGSRDLIEIPDLSKAEKLETVVLADYASLCQLHSSLSSLPKHLYDHSGSMQQRASNLSWLESLIHNIGHFWFLAELDLRGTNVESFLVNIKNLSLLTSLWLDDCTKLVSLPELPLSLERLWLDDCKKLVSLPSELPPSLNDMSACNCTSLKTDFA 1827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01853 1827 Pfam TIR domain 23 193 IPR000157 GO:0007165
Pumo1g01853 1827 Pfam TIR domain 1074 1231 IPR000157 GO:0007165
Pumo1g01853 1827 Pfam Leucine Rich Repeat 597 615 IPR011713 -
Pumo1g01853 1827 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 185 - -
Pumo1g01853 1827 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 851 IPR044974 GO:0006952
Pumo1g01853 1827 FunFam Disease resistance protein (TIR-NBS-LRR class) 1072 1222 - -
Pumo1g01853 1827 SMART AAA_5 214 342 IPR003593 GO:0016887
Pumo1g01853 1827 SMART AAA_5 1251 1389 IPR003593 GO:0016887
Pumo1g01853 1827 Gene3D Ribonuclease Inhibitor 486 722 IPR032675 -
Pumo1g01853 1827 SMART till_3 23 157 IPR000157 GO:0007165
Pumo1g01853 1827 SMART till_3 1049 1201 IPR000157 GO:0007165
Pumo1g01853 1827 ProSiteProfiles TIR domain profile. 1066 1220 IPR000157 GO:0007165
Pumo1g01853 1827 Pfam NB-ARC domain 203 402 IPR002182 GO:0043531
Pumo1g01853 1827 Pfam NB-ARC domain 1241 1471 IPR002182 GO:0043531
Pumo1g01853 1827 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1222 1481 IPR027417 -
Pumo1g01853 1827 ProSiteProfiles TIR domain profile. 22 183 IPR000157 GO:0007165
Pumo1g01853 1827 Gene3D - 20 184 IPR035897 -
Pumo1g01853 1827 Gene3D - 1074 1221 IPR035897 -
Pumo1g01853 1827 FunFam Disease resistance protein (TIR-NBS-LRR class) 336 418 - -
Pumo1g01853 1827 SUPERFAMILY "Winged helix" DNA-binding domain 1458 1564 IPR036390 -
Pumo1g01853 1827 SUPERFAMILY Toll/Interleukin receptor TIR domain 1076 1203 IPR035897 -
Pumo1g01853 1827 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 428 IPR027417 -
Pumo1g01853 1827 Gene3D - 1388 1471 IPR042197 -
Pumo1g01853 1827 Gene3D - 334 418 IPR042197 -
Pumo1g01853 1827 Gene3D Ribonuclease Inhibitor 1569 1826 IPR032675 -
Pumo1g01853 1827 Gene3D Ribonuclease Inhibitor 726 927 IPR032675 -
Pumo1g01853 1827 Gene3D - 1222 1386 IPR027417 -
Pumo1g01853 1827 Gene3D - 185 328 IPR027417 -
Pumo1g01853 1827 SUPERFAMILY L domain-like 1584 1821 - -
Pumo1g01853 1827 SUPERFAMILY L domain-like 474 884 - -
Pumo1g01853 1827 Coils Coil 249 269 - -
Pumo1g01853 1827 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 160 IPR035897 -
Pumo1g01853 1827 PRINTS Disease resistance protein signature 279 293 - -
Pumo1g01853 1827 PRINTS Disease resistance protein signature 217 232 - -
Pumo1g01853 1827 PRINTS Disease resistance protein signature 369 383 - -
Pumo1g01853 1827 PRINTS Disease resistance protein signature 743 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01853 Pumo-Chr1 35610569 35672620 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01853 20 822 WRKY Transcription Factor Family AT4G12020 32.736 4.03e-96 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01853 - - gmx:100813283 1212.98