Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01851 ATGTATGAGCAGCAAAGGATAAGTGTTGTTGCTTCTTCCTCCAACTCTTCTTCTATGGTGTCTTCTAAAAAATATGATGTTTTTCTAAGCTTTCGAGGGGAAGACACCCGCAGGAACTTCGCAAGCCATCTATATAAAGCTTTGAATGAAGAGAAAGTCAAAACCTACATAGACGACCAGCTCAAAAAGGGAGATGAAATCTCACCAGCACTCATCAATGCTATCGAAAATTCTCGTATAGCTATTGTCATATTCTCAGAGAACTATGCTTCCTCAAAGTGGTGCTTGGGTGAACTCAGCAAGATTCTGGAATGCCAGAAAGTCCAAGGGCAGATTGTCATACCTGTGTTTTATAACATAGATCCATCTCATGTGAGGAAGCAAACTGGGAGCTATGAGCAAGCCTTTGCAAAACATGGGGGAGATATCAGGTGCAACAAATGGAAAACTGCTCTCACTGAAGCAGCCAATTTAGCAGGGTGGGACTCTCAAACATACAGGACTGATCCTGAATTACTTAAGGACATTGTTGGAGATGTTTTGCAAAAGTTGCCTCCTAGATATCCAAGCCAACATAAAGGACTGGTTGGATTTGAGGAAAATATTAAACAGATTGAATCATTACTGAAAAGTGGGTCAAGTGAAGTTAAGAAAACCATTGGAATATGGGGCATGGGTGGCATAGGTAAGACCACCCTTGCTACTGCTTTATATGACAAACACTCTCATAAGTTTGAAGGTCGTTGCTTCGTTGCAAATGCAGGGGAAAAATCAAACAAACTCAAAGATTCTGAGAGAAGTAGCCTTCGAGGTAAAAAAGTTTTCATTGTCCTGGATGATGTGGCTACCTCAGAGCAATTAGAAAAACTGGTTGTAGATTATGATTCCTGGGGACCAGGAAGTAGGGTCATTGTTACAACTAGAAATAAGCAAATACTTCCAGATGACACATTATATCAGGTCCCAGATTTGAGCTCTCATCACTCTCTTCAGCTATTCTGTTTGACTGTTTTTGGAGAAAAACAACCTAAAGATAAATATGGATATCTATCAAGTAAAGTAATTTCCTATTGCAACGGTAATCCTTTGGCTTTAAAAGTTATGGGTGCAAGTCTTCGTAAAAGAAGTGAAGAGGCTTGGGAATGTGAATTGAAAAAACTCCACAAGATTCAGAAAATGGAAATTTACAATGTATTAAAATTAAGTTATGATGGCTTAGATCCTTTTGAAAAGAACATATTTTTGGACATTGCATGCTTCTTCAAAGGACAAAGAAGAGATTGGGTAACATGCGTACTAAAAGCTTTTGGTTTCTTTCCAGCATCTGGGATAGAAGTCCTTTTAGATAAAGCTCTTATAACAATTTCATGTGACAATCAGATAGAAATGCATGACTTGATACAGGAAATGGGTCGGACAATTGTTCATCAAGAATCTAAAGACCCTGGAAGACGAAGTCGATTATGTAGACCTGAGGAAGTGCATGACACATTGAAACATAACAAGGGAACTGATGCTGTTGAAGGCATAATTTTTGATCTGCAAAAATTAACTGGGGATCTAAATTTGAGTTCTGAATCCCTTGCAAAGATGACTAACATGAGATTTCTTAAAATCTATAACTGGTACCACAACAGCTTCAATGTGAACCATCCTAATGGTCTTGTGTCATTGTCCAATAAATTGAGGTACCTTGAGTGGGATGGATGTTGTCTTGAGTCTTTGCCACCTAACTTTTGTTCTGAACAACTTGTAGAGATTAGAATGCCTAGAAGCAAGCTTAAAAGGCTCTGGGACGGGGTTCAGAATTTTGTCAATTTAAAGAAAATTGACCTTGAAAACTCCCAAAACCTGATCGAGATCCCAGACTTATCTAAGGCAAAAAAACTTGACACGATAGATTTAAGAAACTGTAGAATGATTGAAACCCTTAAGATTCATTCAGAATCTCTCAGAGAACTTCATCTCGCTAATTGTTCATCTCTCAAGGACATCTCAGTGACATCACAGGGAATAACAAAATTGGAATTATATGGCATTGCTATACGTGCATTGTCATCTTCAATGTTATCTCTCCCAAAGCTTACATATTTGAATTTAAGGGACTGCAGAGAGATTGAAAGCCTTGACCTTCATTCAAAAACTCTCAGAGAACTTTATCTTACGGATTGTTCATCTCTCAAGGACATCTCAGTGACATCAGAGGAAATGACAAAATTGAAATTATCTTGCATTGCTATACGTGCATTGTCATCATCAATGTTATCTCTCCCCAAGCTTACATCTTTGGATTTAATGGGTTGCAGAGAGATTGAAAGCCTTGACCTTCATTCAAAAACTCTTAGAGAACTGTATATTGCTGGTTGTTCATCACTCAAGCACATCTCAGTGACATCAGAGGAAATGACAAAATTCAAATTATTTGGCATTGCTATATGTGCATTGTCATCATCAATGTTATCTCTCCCCAAGCTTACATCTTTGGATTTAATGGGCTGCAGACAGATTGAAAGGCTTGACCTTCATTCAAAAACTCTCAAAGATCTTTATCTCGCTGGATGTTCATCTCTCAAGGAAATCTCAGTGACATCAGAGAAAATGAGAGAACTGGACTTATCTGGCTGCAGAGTGATTGAAAGCCTTAAACTTCATTCAAAATCTTTCAAGTTACTGAGACTGGATGGTTGTTCATCTCTCAAGGAAATCTCAGTGACATCAGAGGAAATGAGAGAATTGGACTTATCTGGCTGCAGAGGGATTGAAAGCCTTAATCTTCATTCAAAATCTCTCAAATTACTGAGACTGGATGGTTGTTCATCTCTCGAGGAAATCTCAGTGACATCAGAGATAATGACGAGTATGTACTTATCTGGCACTGCTATATGTGCATTGCCGTCATCAGTTGGTCACTTATTGTGTTTAGAAGTGTTAGACCTTAGTGGAAGTAATGTTGAGAGTTTGCCAGCAAACATCAAAAACCTTTCAATGCTGAGAGAGCTTTGGTTAGATGATTGCAGGAAACTCATGTCTCTACCAGAGCTTCCACCGTCACTGAGAGAGCTTTGGTTAGATGATTGCAGGAAACTTGTGTCTCTACCAGAGCTTCCACCTACCCTGCATGTGGTGAGCGCCTTTAACTGCATTTCTTTGGAGACAGACTTCGCTCAACGGCTAGTGTTACAACACATGTTACAGAGCTGCATACCCTACTTACACCAACATTGTCCTAACTTATGGGTCAAAGATTATTTCGCCTTCCCAGGAGACCATGTCATGGACAAGTGTAGGTTTCATACAGCAGAGAGTTCAATAACAATTCCTTGTCTTCAAACATCTCATTTACAGGGTTTCATTTACTGCATCATTCTTTCTAAGGGATTAGTCTCCCATGATATTTTGGCATCTATCTATCAGGATGACATAAGGGTCTGGTACAGTTGTGACGGCTGGGAGGACAGTTATACATGTTGCCAAAATCCAATTTCAGATCATGTGATAGTTTGGTATCATGACATCAGCAAATATGACAGAATAAGTGAAGTGTATGATCCTTCCAGGGACATAACATTTATATTTAAATTTGATGGAGATAAAGAAAACATAAAAGGGTTTGGTGTCTTTCCAGTATATGCCACAGCACTGGGGCTTAAGCTGGAAACTTTTGAATCAGAATCCATTGACTGGGAAAAGCTTCCTGCATCGAAGAGGAGGAGGACTTAG 3720 0.3901 MYEQQRISVVASSSNSSSMVSSKKYDVFLSFRGEDTRRNFASHLYKALNEEKVKTYIDDQLKKGDEISPALINAIENSRIAIVIFSENYASSKWCLGELSKILECQKVQGQIVIPVFYNIDPSHVRKQTGSYEQAFAKHGGDIRCNKWKTALTEAANLAGWDSQTYRTDPELLKDIVGDVLQKLPPRYPSQHKGLVGFEENIKQIESLLKSGSSEVKKTIGIWGMGGIGKTTLATALYDKHSHKFEGRCFVANAGEKSNKLKDSERSSLRGKKVFIVLDDVATSEQLEKLVVDYDSWGPGSRVIVTTRNKQILPDDTLYQVPDLSSHHSLQLFCLTVFGEKQPKDKYGYLSSKVISYCNGNPLALKVMGASLRKRSEEAWECELKKLHKIQKMEIYNVLKLSYDGLDPFEKNIFLDIACFFKGQRRDWVTCVLKAFGFFPASGIEVLLDKALITISCDNQIEMHDLIQEMGRTIVHQESKDPGRRSRLCRPEEVHDTLKHNKGTDAVEGIIFDLQKLTGDLNLSSESLAKMTNMRFLKIYNWYHNSFNVNHPNGLVSLSNKLRYLEWDGCCLESLPPNFCSEQLVEIRMPRSKLKRLWDGVQNFVNLKKIDLENSQNLIEIPDLSKAKKLDTIDLRNCRMIETLKIHSESLRELHLANCSSLKDISVTSQGITKLELYGIAIRALSSSMLSLPKLTYLNLRDCREIESLDLHSKTLRELYLTDCSSLKDISVTSEEMTKLKLSCIAIRALSSSMLSLPKLTSLDLMGCREIESLDLHSKTLRELYIAGCSSLKHISVTSEEMTKFKLFGIAICALSSSMLSLPKLTSLDLMGCRQIERLDLHSKTLKDLYLAGCSSLKEISVTSEKMRELDLSGCRVIESLKLHSKSFKLLRLDGCSSLKEISVTSEEMRELDLSGCRGIESLNLHSKSLKLLRLDGCSSLEEISVTSEIMTSMYLSGTAICALPSSVGHLLCLEVLDLSGSNVESLPANIKNLSMLRELWLDDCRKLMSLPELPPSLRELWLDDCRKLVSLPELPPTLHVVSAFNCISLETDFAQRLVLQHMLQSCIPYLHQHCPNLWVKDYFAFPGDHVMDKCRFHTAESSITIPCLQTSHLQGFIYCIILSKGLVSHDILASIYQDDIRVWYSCDGWEDSYTCCQNPISDHVIVWYHDISKYDRISEVYDPSRDITFIFKFDGDKENIKGFGVFPVYATALGLKLETFESESIDWEKLPASKRRRT 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01851 1239 SUPERFAMILY L domain-like 781 944 - -
Pumo1g01851 1239 Pfam Leucine Rich Repeat 583 602 IPR011713 -
Pumo1g01851 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 417 IPR027417 -
Pumo1g01851 1239 Gene3D Ribonuclease Inhibitor 812 952 IPR032675 -
Pumo1g01851 1239 Gene3D Ribonuclease Inhibitor 953 1082 IPR032675 -
Pumo1g01851 1239 Gene3D Ribonuclease Inhibitor 498 811 IPR032675 -
Pumo1g01851 1239 Gene3D - 323 407 IPR042197 -
Pumo1g01851 1239 Pfam TIR domain 24 196 IPR000157 GO:0007165
Pumo1g01851 1239 Gene3D - 261 317 IPR027417 -
Pumo1g01851 1239 Gene3D - 21 184 IPR035897 -
Pumo1g01851 1239 ProSiteProfiles TIR domain profile. 23 184 IPR000157 GO:0007165
Pumo1g01851 1239 Pfam NB-ARC domain 258 393 IPR002182 GO:0043531
Pumo1g01851 1239 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 185 - -
Pumo1g01851 1239 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 710 IPR044974 GO:0006952
Pumo1g01851 1239 SUPERFAMILY L domain-like 463 1035 - -
Pumo1g01851 1239 Gene3D - 185 260 IPR027417 -
Pumo1g01851 1239 PRINTS Disease resistance protein signature 358 372 - -
Pumo1g01851 1239 PRINTS Disease resistance protein signature 755 771 - -
Pumo1g01851 1239 PRINTS Disease resistance protein signature 219 234 - -
Pumo1g01851 1239 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 161 IPR035897 -
Pumo1g01851 1239 SMART till_3 24 158 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01851 Pumo-Chr1 35483754 35488099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01851 196 825 WRKY Transcription Factor Family AT5G45050 33.774 2.93e-93 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01851 - - ccaj:109806118 1195.26