Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01816 ATGTCGGCTCCCTTGGCAAGTTGCTCTGACAAATACATTGGTGTTGGAGAAAGAGAAGAGGTGCAGTTATATTATTACTTTGTTGAATCTCAAAGGAGCCCCTTGAATGACCCCCTTCTACTTTGGCTTGTTGGAGGTCCAGGTTGCTCTGCTCATTCTACTTTCTTCTATGAAAACGGGCCATTAATGTTTAATTATGACGATTTTAATGGGAGTTTTCCACAGCTTCTATTGAATCCGAACACTTGGACAAAGGTACTCAACATATTATATGTGGATGCACCTGTTGGTACGGGATATTCTTACTCGAAAACACAAGAAGGCTATTATAGCAATGACAAGCAATTGGTTGAACACATCTATGATTTTTTCCAGAAGTGGCTGGTGGATCACCTTGAATTCAGATCAAATCCACTTTACATTGGTGGTGGTTCTTATTCAGGCTTAGCTGTTCTTCCCCTTGTTCAGAAAGTATATGAAGATTATAAAGCAGCACGCTCACCAATCCTGAACTTCCAAGATGACCAATATGTGCTTGGAGAATTATGGGCAAATGATCCACATGTTCGAAAGGCTCTTCGAGTTAGAGAGGGTACCAAAGAGCTCTTTGAAAGATGCAATCGTAGTGCTGCATATACAAGGAACATTCCTAGTGTTGTTCAATACCTTCATAATCTTACAAACACAAACCTGCGATCTCTAGTTTACTGTACTACCAGTGCAACATTTTCTGTATTTATCTTTCACAACGGCAATCTTGACATATCGATACCATATCTTAGTTCACTTTCTATTGTCAAGTCACTTAATTTGAAATTGGATATGACTTGGCATCCATGGTTCGTTGATGGTGAAGTGGCAGGATATGCAGAGGAATACCAAAAAAGTGAGTATCGCCTAACGTACGTCATTGTGAAGGGAGGATGTCATGTGGCACAAGAGAACAAGCCTAAGGAGGTATATGAGATGATTGACAGATGGTTGTCATTTTCTGATATATAA 1002 0.3982 MSAPLASCSDKYIGVGEREEVQLYYYFVESQRSPLNDPLLLWLVGGPGCSAHSTFFYENGPLMFNYDDFNGSFPQLLLNPNTWTKVLNILYVDAPVGTGYSYSKTQEGYYSNDKQLVEHIYDFFQKWLVDHLEFRSNPLYIGGGSYSGLAVLPLVQKVYEDYKAARSPILNFQDDQYVLGELWANDPHVRKALRVREGTKELFERCNRSAAYTRNIPSVVQYLHNLTNTNLRSLVYCTTSATFSVFIFHNGNLDISIPYLSSLSIVKSLNLKLDMTWHPWFVDGEVAGYAEEYQKSEYRLTYVIVKGGCHVAQENKPKEVYEMIDRWLSFSDI 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01816 333 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 177 317 IPR001563 GO:0004185|GO:0006508
Pumo1g01816 333 Pfam Serine carboxypeptidase 12 173 IPR001563 GO:0004185|GO:0006508
Pumo1g01816 333 Pfam Serine carboxypeptidase 182 329 IPR001563 GO:0004185|GO:0006508
Pumo1g01816 333 SUPERFAMILY alpha/beta-Hydrolases 12 329 IPR029058 -
Pumo1g01816 333 Gene3D alpha/beta hydrolase 7 178 IPR029058 -
Pumo1g01816 333 Gene3D - 179 332 - -
Pumo1g01816 333 PRINTS Carboxypeptidase C serine protease (S10) family signature 79 91 IPR001563 GO:0004185|GO:0006508
Pumo1g01816 333 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 152 IPR001563 GO:0004185|GO:0006508
Pumo1g01816 333 PRINTS Carboxypeptidase C serine protease (S10) family signature 300 313 IPR001563 GO:0004185|GO:0006508
Pumo1g01816 333 PRINTS Carboxypeptidase C serine protease (S10) family signature 92 102 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01816 Pumo-Chr1 32785282 32817790 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01816 179 329 Calmodulin-binding Proteins AT2G22960 33.775 9.21e-25 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01816 K16296 - qsu:112035791 325.479