Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01812 ATGGTTGAACCTGGTAATGTAGTTCCATTATCATCCTTCCCTTCTCCATTTGATGACCACACTGCTTATACTATTGTTAACTCATCCTCTTTGCAAATTCCACCATCCTCTATTGTTCATCACGACCATCTTGTATCTCCACCAACAAAGAAAAAAGTTGGCAGCCCTTTAGGATCTAAAAACAAGCCAAAACTATCTCCCATGATTAGCCAAGCCAATGTGGAACTCCTCAAACCCATTTTCATTGAAGTCTCTGATAATTGTGATGTGATTAAGGCAATGGTTGAATTCGCTCGTCGCCACCAAGATAACATCACAGTGTTAAGTGCATCGGGCACCATTTCCAATGTCACTCTTAACAATCCTGATTCTCATGCTTCTGCTTTCACTTTTTATGGACCATTCAAATTAATTTCCCTCACTGGCACCTACATAAATAATACTACTTCCTCTAGTTCTTCATCTTTATCATCATCATTTAATCTTGACCCTTGTTGTTTTAGGATTTCCTTTTCTACAACTTCAGGTCAAAGCATTATTGGGGTTGTTAGAGGAAAGGTTGTGGCAGCTAATGAGGTTCTTGTGGTGGTTGCTATTATCAACAACCCTAAGGTTCACAAGGATGGGATCAATAACAATAGTAAATAA 648 0.3873 MVEPGNVVPLSSFPSPFDDHTAYTIVNSSSLQIPPSSIVHHDHLVSPPTKKKVGSPLGSKNKPKLSPMISQANVELLKPIFIEVSDNCDVIKAMVEFARRHQDNITVLSASGTISNVTLNNPDSHASAFTFYGPFKLISLTGTYINNTTSSSSSSLSSSFNLDPCCFRISFSTTSGQSIIGVVRGKVVAANEVLVVVAIINNPKVHKDGINNNSK 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01812 215 Pfam Plants and Prokaryotes Conserved (PCC) domain 78 201 IPR005175 -
Pumo1g01812 215 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 206 - -
Pumo1g01812 215 CDD DUF296 78 189 IPR005175 -
Pumo1g01812 215 MobiDBLite consensus disorder prediction 42 64 - -
Pumo1g01812 215 Gene3D - 77 213 - -
Pumo1g01812 215 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 43 207 IPR014476 GO:0003680
Pumo1g01812 215 ProSiteProfiles PPC domain profile profile. 74 215 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01812 Pumo-Chr1 32282665 32283312 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01812 50 207 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 35.625 1.51e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01812 - - gmx:100790942 234.187