Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01804 ATGGCTTTCACACTAGACAGGTTTGAGGAGAATATGGTTCTCACTTTTGAGTCTCAGAAGTCAGTGCCAGCACCCTTCCTGACAAAGGCATACCAGCTTGTTGATGACCCTCACACTGACCACATTGTATCATGGGGTGAAGATGAAACCACATTTGTTGTGTGGAGGCCCCCTGAGTTTGCCAGAGATCTTCTTCCAAACTATTTCAAACACAACAACTTCTCAAGCTTTGTTAGGCAACTAAACACCTATGGTTTCAAGAAGGTAGTTGCTGACAGGTGGGAGTTTGCAAATGAGTACTTCAGAAAAGGAGCCAAGCACCTTTTATGTGAAATCCACAGGAGAAAAGCACCTCAGCAGCATCACCAACTCTTCCATGACCAATCACCATCCCAGATTCTCCAGCAAGATGAAAATCTCTGCTGGCTTGACACTCCTCTACCATCTCCAAAGCCAAACACAGACATTCTAACAGCACTTTCTGAAGACAATCAAAGACTAAGGAGAAAGAACTTCATGCTCCTATCAGAACTCAGTCACATGAAGAGTTTGTACAATGACATCATATACTTCATCCAAAACCATGTAAAGCCAGCACCCTTTGAAGAAAGAAGCAGCAGTGTTGTTATTCCAAAGCTGGTGGAGTTGGACTCATTGCATGAGTCTCCAAATTACATGGGGCTTCTCAGAAGTGCCAAAAGTTGTGTTGTGGATGATAAGTCTTTGATTGCTTCTTCTACTGAGGAATCAAACAGTTCTGTGAAGCTCTTTGGGGTCCCTCTAAGTGGCAGCAGAAAGAGATTGCACCCAGATAACACTAATTGA 825 0.4352 MAFTLDRFEENMVLTFESQKSVPAPFLTKAYQLVDDPHTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFRKGAKHLLCEIHRRKAPQQHHQLFHDQSPSQILQQDENLCWLDTPLPSPKPNTDILTALSEDNQRLRRKNFMLLSELSHMKSLYNDIIYFIQNHVKPAPFEERSSSVVIPKLVELDSLHESPNYMGLLRSAKSCVVDDKSLIASSTEESNSSVKLFGVPLSGSRKRLHPDNTN 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01804 274 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo1g01804 274 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo1g01804 274 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo1g01804 274 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo1g01804 274 FunFam Heat stress transcription factor B-4 18 116 - -
Pumo1g01804 274 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Pumo1g01804 274 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo1g01804 274 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo1g01804 274 Gene3D - 18 116 IPR036388 -
Pumo1g01804 274 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 205 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01804 Pumo-Chr1 31911696 31913435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01804 10 269 HSF AT1G46264 50.323 2.26e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo1g01804 HSF_DNA-bind 4.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01804 K09419 - gmx:100806150 516.538