Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01801 ATGGGCAACTGTTGCTCTCAAGGCAACGCTGCCGACGGCCCGGCCGACGACTCCGCCGCCGCCAATAACAAGGGAGAAACCAACCAACAAGGCAGCAGCCATGGAAACAACAACAACACTTCCACAAACCCTACCACCACTGCCCCGCCACCGACGTCAACGCCACCGCCCACGGTCACACCGCCTTCTTCAAAACCCTCGAAGCCGGGTGCCATGGGCCCCGTCCTAGGCCGCCCGATGGAGGACGTGAGAGCCACGTACACCATCGGGAAGGAGCTAGGGCGAGGCCAATTCGGTGTCACGCACTTGTGCACCGACAAGGCCACGGGGCAGCAATTCGCATGCAAGACCATTGCCAAGAGGAAGCTTGTGAACAAGGAGGATATAGAGGACGTGAGAAGAGAGGTGCAAATCATGCACCATCTCTCAGGCCAACCCAACATTGTGGAGCTCAAGGGTGCCTATGAGGACAAACAATCGGTGCATTTGGTCATGGAGCTTTGTGCCGGTGGTGAACTCTTTGATCGTATCATTGCCAAGGGACATTACACTGAACGTGCCGCGGCTTCATTGTTGAGAACCATCATGCAAATTATTCACACTTTCCATTCCATGGGTGTCATTCATAGAGATCTTAAGCCCGAGAATTTCCTCATGTTGAATAAGGATGAGGATGCACCTCTCAAGGCTACGGATTTTGGTCTATCCGTTTTTTTCAAAGAAGGAGAGACATTCAAAGACATTGTTGGAAGTGCATATTACATTGCTCCTGAAGTCTTGAAGAGGAAATATGGGCCAGAAGTTGACATATGGAGTGTTGGTGTCATGCTATACATTCTTCTAAGTGGTGCCCCTCCATTTTGGGCAGAATCCGAACATGGTATATTCAATGCCATCCTAAGAGGCCACATTGATTTTACAAGCGATCCATGGCCTTCAATGTCACCTGCAGCAAAGGATCTTGTAAGGAAAATGTTGAATTCAGACCCCAAACAAAGACTGACAGCACAAGAAGTTCTAAATCATCCATGGATCATGGAGGATGGAGAAGCACCAGATAAACCACTTGACAATGCTGTACTGAATAGGCTCAAGCAATTCAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAGGGTCATTGCTGGATGTCTATCAGAAGAAGAAATCATGGGGTTGAAGGAAATGTTCAGGGGGATGGACACTGACAACAGTGGAACCATCACAATTGAAGAACTCAAGCAAGGGCTTGCAAAGCAGGGAACAAAGCTTACAGAGCAAGAAGTTAAGCAATTAATGGAAGCTGCTGATGCTGATGGCAATGGAACCATTGATTACGACGAGTTCATCACTGCAACAATGCACATGAACAGAATGAACAGAGAAGAACATCTTTACACTGCTTTCCAATACTTTGATAAAGATAACAGCGGGTTCATTACCACTGAAGAACTAGAACAAGCTCTCCGTGAGTTTAACATGCATGATGGCAGGGACATCAAGGATATCCTTCAAGAAGTTGATGGAGATAATGATGGACGCATTAACTATGACGAGTTTGCGGCGATGATGAGAAAGGGAAATCCAGAAGTTATGACTAAGAAGAGGCGTGACTCAATGCCTTTGCCTTAG 1632 0.4743 MGNCCSQGNAADGPADDSAAANNKGETNQQGSSHGNNNNTSTNPTTTAPPPTSTPPPTVTPPSSKPSKPGAMGPVLGRPMEDVRATYTIGKELGRGQFGVTHLCTDKATGQQFACKTIAKRKLVNKEDIEDVRREVQIMHHLSGQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIMQIIHTFHSMGVIHRDLKPENFLMLNKDEDAPLKATDFGLSVFFKEGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLSGAPPFWAESEHGIFNAILRGHIDFTSDPWPSMSPAAKDLVRKMLNSDPKQRLTAQEVLNHPWIMEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFRGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGTIDYDEFITATMHMNRMNREEHLYTAFQYFDKDNSGFITTEELEQALREFNMHDGRDIKDILQEVDGDNDGRINYDEFAAMMRKGNPEVMTKKRRDSMPLP 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01801 543 MobiDBLite consensus disorder prediction 21 47 - -
Pumo1g01801 543 SMART serkin_6 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01801 543 ProSiteProfiles EF-hand calcium-binding domain profile. 388 423 IPR002048 GO:0005509
Pumo1g01801 543 MobiDBLite consensus disorder prediction 48 68 - -
Pumo1g01801 543 SMART efh_1 499 527 IPR002048 GO:0005509
Pumo1g01801 543 SMART efh_1 428 456 IPR002048 GO:0005509
Pumo1g01801 543 SMART efh_1 464 492 IPR002048 GO:0005509
Pumo1g01801 543 SMART efh_1 392 420 IPR002048 GO:0005509
Pumo1g01801 543 Pfam EF-hand domain pair 393 453 IPR002048 GO:0005509
Pumo1g01801 543 Pfam EF-hand domain pair 462 525 IPR002048 GO:0005509
Pumo1g01801 543 ProSitePatterns Protein kinases ATP-binding region signature. 93 120 IPR017441 GO:0005524
Pumo1g01801 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Pumo1g01801 543 Gene3D Phosphorylase Kinase; domain 1 88 172 - -
Pumo1g01801 543 ProSitePatterns EF-hand calcium-binding domain. 437 449 IPR018247 -
Pumo1g01801 543 ProSiteProfiles EF-hand calcium-binding domain profile. 499 530 IPR002048 GO:0005509
Pumo1g01801 543 FunFam Calcium-dependent protein kinase 1 353 528 - -
Pumo1g01801 543 ProSitePatterns EF-hand calcium-binding domain. 508 520 IPR018247 -
Pumo1g01801 543 FunFam calcium-dependent protein kinase 1 173 352 - -
Pumo1g01801 543 PANTHER SERINE/THREONINE-PROTEIN KINASE 82 520 - -
Pumo1g01801 543 MobiDBLite consensus disorder prediction 1 79 - -
Pumo1g01801 543 SUPERFAMILY EF-hand 385 525 IPR011992 -
Pumo1g01801 543 ProSitePatterns EF-hand calcium-binding domain. 401 413 IPR018247 -
Pumo1g01801 543 CDD STKc_CAMK 87 344 - -
Pumo1g01801 543 SUPERFAMILY Protein kinase-like (PK-like) 74 373 IPR011009 -
Pumo1g01801 543 ProSiteProfiles Protein kinase domain profile. 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01801 543 ProSiteProfiles EF-hand calcium-binding domain profile. 424 459 IPR002048 GO:0005509
Pumo1g01801 543 Pfam Protein kinase domain 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01801 543 FunFam Calcium-dependent protein kinase 1 89 172 - -
Pumo1g01801 543 Gene3D - 353 528 - -
Pumo1g01801 543 ProSitePatterns EF-hand calcium-binding domain. 473 485 IPR018247 -
Pumo1g01801 543 Gene3D Transferase(Phosphotransferase) domain 1 173 352 - -
Pumo1g01801 543 ProSiteProfiles EF-hand calcium-binding domain profile. 460 495 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01801 Pumo-Chr1 31823763 31828358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01801 1 538 EF-hand Containing Proteins AT5G12180 79.740 0.0 898
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pumo1g01801 Pkinase 1.5e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01801 K13412 - gmx:100781355 996.882