Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01786 ATGGAAATCTCCCTCTCCCAAAACTCTTTCTCCTCCGACCCAGACTGTGAATCCTCCTCGAACATTTGCATTGGCTCTTCCTCCCAACATTGTCCACCACCATCACCACCTGCCACCAAGAATCAGCCTCTCGTGAGCCAACATGCTAAGAAGCTACGCAACAAGCCCTTGGGCTCCAAGAACAAGCCCAAGTCCACCTCCCTCCTGATGGTCCAACCCACCTCCTTGCCGATGGCCCAACCCATTGAGCCCTCTGCCAAGTTTGTCATGGTCAATGTGGTGCCAAGAAGGGATGTCATCGAGACCATCCTTGACGTCGCTCACAAGAACCATGTCAGCCTCGTCATCCTCAGTGCCTCCGACATGATCAATATTGTGACCCTTCGCAACTCACCCTATGGCGGCCCTTCCCCCATGCTCCACTGGCCCTTCAACCTGCTCTCCCTCACTGGCTCCCACTTGTACAACTACCACAATACTATTCACCTTGGAGCCACCGCTCCCTCTCCTTTATGCTTTGGAATCAACCTTTCCACCTCTCATGGACAGGTCTTCGGTGGCCCTATCAATGGCCCAGCCATCGCCAGTGATGACGTTAGCCTCATGGTCTCCACCTTTATTTACATGTATGTTTCTTAA 639 0.529 MEISLSQNSFSSDPDCESSSNICIGSSSQHCPPPSPPATKNQPLVSQHAKKLRNKPLGSKNKPKSTSLLMVQPTSLPMAQPIEPSAKFVMVNVVPRRDVIETILDVAHKNHVSLVILSASDMINIVTLRNSPYGGPSPMLHWPFNLLSLTGSHLYNYHNTIHLGATAPSPLCFGINLSTSHGQVFGGPINGPAIASDDVSLMVSTFIYMYVS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01786 212 Pfam Plants and Prokaryotes Conserved (PCC) domain 89 206 IPR005175 -
Pumo1g01786 212 MobiDBLite consensus disorder prediction 1 68 - -
Pumo1g01786 212 Gene3D - 86 211 - -
Pumo1g01786 212 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 206 IPR014476 GO:0003680
Pumo1g01786 212 MobiDBLite consensus disorder prediction 1 29 - -
Pumo1g01786 212 ProSiteProfiles PPC domain profile profile. 83 212 IPR005175 -
Pumo1g01786 212 SUPERFAMILY AF0104/ALDC/Ptd012-like 88 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01786 Pumo-Chr1 30657686 30658324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01786 37 207 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 28.492 1.26e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01786 - - gmx:100818645 192.971