Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01783 ATGACTTCCTCACTCGTGAAGATCGAAGGCGAGCAGGTCCTCACCAACGATTTTCAGGACCTTTCAATCAAAGATCTGAATGAGAAAGGGAGTGAGACAGAGATTCACGATGTGGGGTATGGAAGCCATGGGGGAATCTGTGCTATTTGCTTGGATAAGATAGTGCTGCAGGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCTTACTGTGTAACATGCATCCTTCGTTGGGCTACATACCGTGAAAAAGTTACCTGTCCTCAGTGTAAACATCCATTTGAGTTCCTCAATGTCCATCGCTCACTTGATGGCAGCATTCAAGATTACATGTTTGAGGAGAGTGTTTGCCTGCTACTTCGGGCCTCGTGGTTCACACCTTTATCTGTTGACGAACATGTGGTTCATGAAGATGCATATGAAGACCTAGAAGATTATTATTATCAGTACGAGGACGATGGTGATATGGATGAAGTTTACTATGGTGGTTCGTCCAGTCTTCGCGTTATTGGCAACCGTAGATGGGGAGATAATGGTTATGTCAGGGCTGGCCGTCAAGAAGCTCGGCCAGTCCATCGTCCGAACTTCCAGGATTCAGGAGCAAGTTCTTCTTCGCGCGAGCCGAAGAAGAAAGAGGCTGGGAAAAGCATCACAGGCAGAAGGGCAAAGAGGGCACAGAAAAGGGAGGCTGCCGACAAGGCGGCCGAAGCGAAGCATCAGCAGCATTTAATAAGGTTGGGTAGGAAGTGA 747 0.4779 MTSSLVKIEGEQVLTNDFQDLSIKDLNEKGSETEIHDVGYGSHGGICAICLDKIVLQETALVKGCEHAYCVTCILRWATYREKVTCPQCKHPFEFLNVHRSLDGSIQDYMFEESVCLLLRASWFTPLSVDEHVVHEDAYEDLEDYYYQYEDDGDMDEVYYGGSSSLRVIGNRRWGDNGYVRAGRQEARPVHRPNFQDSGASSSSREPKKKEAGKSITGRRAKRAQKREAADKAAEAKHQQHLIRLGRK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01783 248 Pfam Ring finger domain 47 90 IPR001841 -
Pumo1g01783 248 MobiDBLite consensus disorder prediction 183 248 - -
Pumo1g01783 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 113 IPR013083 -
Pumo1g01783 248 MobiDBLite consensus disorder prediction 203 241 - -
Pumo1g01783 248 CDD RING-HC_Topors 47 93 - -
Pumo1g01783 248 ProSitePatterns Zinc finger RING-type signature. 65 74 IPR017907 -
Pumo1g01783 248 ProSiteProfiles Zinc finger RING-type profile. 47 90 IPR001841 -
Pumo1g01783 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 248 - -
Pumo1g01783 248 SUPERFAMILY RING/U-box 46 96 - -
Pumo1g01783 248 SMART ring_2 47 89 IPR001841 -
Pumo1g01783 248 Coils Coil 219 239 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01783 3 248 C3H Transcription Factor Family AT5G19430 58.824 1.07e-92 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01783 - - gmx:100777135 428.328