Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01782 ATGGGGAACAACAACAACAACCACCACCGTAACAGAATTCAGTTATGGCAAGAGCAGGAGACTTCACCACCGCAACACGTGCAGGAGCGTGACACGTGCGGGAATGGGGGTTTGGGTGGTGGGAGTGGGACTGGCACGTGCCAGGACTGTGGGAACCAGGCGAAGAAGGATTGCAGCCACAGGAGGTGCAGGACGTGTTGCAAGAGTAGGGGTTTTGATTGCTCCACGCACGTGAAGAGCACGTGGGTCCCCGCGGCGAGGCGGAGGGAGAGGCAGCTCATGACGGTGGCAGCCCCGGCGGCGGTTGGGTCCAGTGGGGCCACTTCCTCCGGTGCCAAGAAACCTAGGCTCGTTGCTTCCCAGACTACCACTACTTCCCATACTTCAACGTCTAATAATACCACCACTCCTCCTAGGAGCTTTGACACTGGTTCTAGTCACCAAGATGTGGGTTTCAAGGACTCACTACCTTGCCAAGTGAGTGCTCCAGCGGTGTTCAAGTGTGTTCGTGTAACTGCAGTGGATGATGGGGAAGATGAGTATGCCTATCAAGCAGTTGTGAAGATTGGTGGCAAAGTGTTCAAAGGGTTCCTCTATGATCAAGGGGCTGAGGACAAAGAAGGGTATCCTAATTTATCTGAATTACATTTGGGTGGTTGTGGTGGTGGAATTAGTGATGGTGGGGGTGGTGGTAGAAATGGGGTTTCATCTTCATCTCCAATGGTGGATCCTTCTCATGATGTCTATGCAGCTTCAGGTGGAGGAGGGTTATTCGGAGGTTCATCAAACTATGGTAATCCAATAAATTAA 810 0.5235 MGNNNNNHHRNRIQLWQEQETSPPQHVQERDTCGNGGLGGGSGTGTCQDCGNQAKKDCSHRRCRTCCKSRGFDCSTHVKSTWVPAARRRERQLMTVAAPAAVGSSGATSSGAKKPRLVASQTTTTSHTSTSNNTTTPPRSFDTGSSHQDVGFKDSLPCQVSAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGKVFKGFLYDQGAEDKEGYPNLSELHLGGCGGGISDGGGGGRNGVSSSSPMVDPSHDVYAASGGGGLFGGSSNYGNPIN 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01782 269 NCBIfam putative zinc finger domain, LRP1 type 46 88 IPR006510 -
Pumo1g01782 269 NCBIfam LRP1 C-terminal domain 156 202 IPR006511 -
Pumo1g01782 269 Pfam Domain of unknown function (DUF702) 45 204 - -
Pumo1g01782 269 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 4 251 IPR007818 GO:0003700|GO:0006355
Pumo1g01782 269 MobiDBLite consensus disorder prediction 102 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01782 Pumo-Chr1 30501152 30503332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01782 47 249 C2H2 Transcription Factor Family AT5G12330 66.346 3.36e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pumo1g01782 DUF702 1.6e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01782 - - gmx:100816514 379.793