Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01779 ATGGACCTGACCTCCACCAGTACCCACCACACTTCCTTAGATGCTGCTGCTGATACTAAAACCACACCCCCAATCACCAACAGTACCACCCCAACACCAACAACAACAGCAAAGTCTCTATCTTTCACCAACGGCACACTCAAGCGTCACACATCCGTTGCTCCGCCACCGTCCATGGTGGTTGTTTCCTACAAAGAATGCCTAAAAAACCACGCCGCCAGCATCGGCGGCCATGCCCTCGACGGCTGCGGTGAGTTCATGCCTTCCTCCTCCACCGTCCCCTCCGACCCCCGCTCTCTAAAATGCGCCGCGTGCGGCTGCCACCGCAACTTCCACCGCCGCGAACCCCAAGAAAACATCACCAACAACAACAACAACAACGTTAAAAACAATAACCCCACTTTTCTAAGCTGCATCTACACCCCATCAGCGCCAGCGCCACTCTCTCACCGAGCCATGAGCCAAAGCACGAGCCAGAGCCTGAGTTCGAGCCCGAGCCACAGCCCGAGCCCGATGTCAAGCCCGTCACCGCCACCGCTCTCGCACGTGCCACCCTACCACGCTTCGGCACCGCACATGCTACTAGCCCTCGGCACTGCATATTCTGCAGCACCCTCTGATGAACACCATCATCACAAAAGCCTCAACTTTTCAATGATGAAGAGTGAGATGAACCACCCCAAGAAGAGGTACAGGACCAAGTTCAGCAAGGAGCAGAAGGAGAAGATGCACAGCTTCTCTGAGAAATTGGGGTGGAGAATGCAGAAAGGGGATGATGGGTTGGTCCAGGAGTTCTGCAATGACATTGGGGTCTCTAGAGGGGTCTTCAAAGTGTGGATGCACAATAACAAGAACACTCTTAGGAAGAAATCAGATGAGGGAAATGTAAATGCAAATGCAAATGATCCTCAAAGTGCTGATGATGGCAATGCCAATGGTGGTGGTGTTGGTGGTGGTGGTGGATTTGATAGTGATATCAACAACCCCTACAACCCAAATGGCAACAACACCAACAACAATGACATTCACATGAATGAAGAAGATGGGTGTGTCAACAATGTTCATGTTTCTCTTAATGAGATGTCATCTTAG 1092 0.5165 MDLTSTSTHHTSLDAAADTKTTPPITNSTTPTPTTTAKSLSFTNGTLKRHTSVAPPPSMVVVSYKECLKNHAASIGGHALDGCGEFMPSSSTVPSDPRSLKCAACGCHRNFHRREPQENITNNNNNNVKNNNPTFLSCIYTPSAPAPLSHRAMSQSTSQSLSSSPSHSPSPMSSPSPPPLSHVPPYHASAPHMLLALGTAYSAAPSDEHHHHKSLNFSMMKSEMNHPKKRYRTKFSKEQKEKMHSFSEKLGWRMQKGDDGLVQEFCNDIGVSRGVFKVWMHNNKNTLRKKSDEGNVNANANDPQSADDGNANGGGVGGGGGFDSDINNPYNPNGNNTNNNDIHMNEEDGCVNNVHVSLNEMSS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01779 363 NCBIfam homeobox domain, ZF-HD class 228 285 IPR006455 -
Pumo1g01779 363 MobiDBLite consensus disorder prediction 147 186 - -
Pumo1g01779 363 Gene3D - 215 289 - -
Pumo1g01779 363 MobiDBLite consensus disorder prediction 287 346 - -
Pumo1g01779 363 Pfam ZF-HD protein dimerisation region 62 116 IPR006456 -
Pumo1g01779 363 MobiDBLite consensus disorder prediction 326 346 - -
Pumo1g01779 363 MobiDBLite consensus disorder prediction 1 39 - -
Pumo1g01779 363 FunFam Zinc-finger homeodomain protein 2 216 289 - -
Pumo1g01779 363 MobiDBLite consensus disorder prediction 292 308 - -
Pumo1g01779 363 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 115 IPR006456 -
Pumo1g01779 363 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 64 115 IPR006456 -
Pumo1g01779 363 MobiDBLite consensus disorder prediction 170 185 - -
Pumo1g01779 363 MobiDBLite consensus disorder prediction 148 169 - -
Pumo1g01779 363 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 287 - -
Pumo1g01779 363 SUPERFAMILY Homeodomain-like 223 289 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01779 Pumo-Chr1 30371033 30372749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01779 1 295 ZF-HD Transcription Factor Family AT5G15210 40.468 4.02e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo1g01779 ZF-HD_dimer 1.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01779 - - gmx:100814924 482.641