Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01778 ATGGAGGTCCAGCCCGCCCCCGAGCCCGCCACGCCCGTGGACGCGGCGGCGGCGGGGCCCTCCGGTCTGTCTCCGGCGGCGGAGGACGGCGACGGCGACGGCGAGGACGCGCCGCTGCTGCAGTTGGCGGAGTGCCGCATTTGCCAAGAGGAGGACAGCGTCAGCAGTTTAGAGACCCCCTGCTCCTGCAGCGGCAGTCTTAAGTATGCTCATAGAAAGTGCGTCCAGCATTGGTGCAATGAGAAAGGAGACATAATTTGTGAGATATGTCATAAGCCCTATGAACCTGGTTATACTGCCCCACCACCTCGTCCTCAGCCTGAAGAAACTACCATTGATATAGGTCTTGATTGCATGGAGGCTGGACAATCTCTGGCACGCCATTGGACTTGCGTGATCCCCGACTCTTGGCAATTGCTGAGGCTGAACGTCAATTCTTGGAAGGCTGAATACGATGGATATGCTGCTTCTCATGCCAGTGGAGCTGCATTTTGTCGTTCAGTTGCTTTGATTTTAATGGCCCTTTTACTCTTAAGGCATGCACTTTCTGTCACAGATTCTGACTCTGAAGATGATCCATCCACTTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGTCGGCGACAAAGACAAGAGGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTTGTTTTACAATCCGGGCAGCGTAGGGGTCTGCAGTTTGCCATAGCACCAGGACCAACAATGAATTCACACCAGGACCAAGTGTAA 804 0.5286 MEVQPAPEPATPVDAAAAGPSGLSPAAEDGDGDGEDAPLLQLAECRICQEEDSVSSLETPCSCSGSLKYAHRKCVQHWCNEKGDIICEICHKPYEPGYTAPPPRPQPEETTIDIGLDCMEAGQSLARHWTCVIPDSWQLLRLNVNSWKAEYDGYAASHASGAAFCRSVALILMALLLLRHALSVTDSDSEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPTMNSHQDQV 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01778 267 ProSiteProfiles Zinc finger RING-CH-type profile. 37 97 IPR011016 GO:0008270
Pumo1g01778 267 MobiDBLite consensus disorder prediction 1 36 - -
Pumo1g01778 267 Pfam RING-variant domain 45 90 IPR011016 GO:0008270
Pumo1g01778 267 SMART ringv_2 44 91 IPR011016 GO:0008270
Pumo1g01778 267 CDD RING_CH-C4HC3_MARCH 45 91 - -
Pumo1g01778 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 99 IPR013083 -
Pumo1g01778 267 SUPERFAMILY RING/U-box 44 95 - -
Pumo1g01778 267 FunFam RING/FYVE/PHD zinc finger protein 33 101 - -
Pumo1g01778 267 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 35 228 IPR033275 -
Pumo1g01778 267 Pfam Protein of unknown function (DUF3675) 96 218 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01778 Pumo-Chr1 30332292 30336966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01778 33 91 C3H Transcription Factor Family AT2G37950 40.323 2.99e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01778 - - gmx:100817542 383.259