LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo1g01774	ATGACCATGTTTCGCTTCTCTTCCTTTCTCCTACTCCTTCTCTTCCTAGTCCTCATCCTACCACACACAACTCACTCTGATGACATTGCCATTTATTGGGGTTCAAACGATGGTAAGGGTAAATTAATAGAAACATGTGCAACTGGTTTATACTCTTATGTAAACATAGCATTCCTTGCCCATTTTGGAAATGGTCAAACCCCTCAACTGATCCTTGGAAGGCACTGTGACCCTGCTGGGGGGAACTGTTCTTTACTTAGCAGGGAAATCAGAAACTGCCAAAAGCAAGGGATCAAGGTGATGCTATCTATTGGGGGTCCAAGCATGAGTTACTCTCTTGCTTCCTCTGAGGATGCTAAGAATGTTTCTGACTATTTGTGGCACAATTTCTTGGGTGGTGGTGGTAACTCATCTTCAAGTCCACTAGGAGATGCCATATTAGATGGCATAGATTTTGGACTAGGGGGATCCCTCATGACAAAACACTGGGAAGACCTTGCACATTATCTTAAATCACATAGAAGAAATGTGTACTTGAGTGCAGCACCTCAATGCCTTTTCCCAGATAGTGCACTTGGCAAAGCCCTTGAGACTGGACTTTTTGACTATGTTTGGATACAATTCTACAACAATCCTCTCTGTCAGTACAGTGAAGGTAATGTTTATAGCCTTTTTAATGCATGGAAGCAATGGACAACATCATTGAAAGCAGGGAAAATATTCTTGGGGTTGCCTGCATCTCCAACAGCATCTGTAGGTGGCTATATTCCACCTGATTTGTTGATCTCTCAGATCCTGAGTACGGTAAAAATGTATTCTAACTATGGAGGGATTATGCTTTGGTCAAGGTTTTATGATAAAGAGAGTGGATATAGTAAAAAAAATTTGGAAAATAGTCTTTGCCTACAGAAAAGAGAATCTGAATGTGGAAGGCACAAGAATGTTTTTGTTGAACGTTTAGGCTACATGGCCACAGATGGTTTTGTAGTTTCTGAAAACAAGAGCATTGGCAGACAGTGTTGTGAGGTTATATGTAGGAACAATTGTTCCTGTGAGGCTTATGCTCCTCTAAATTTTGTTAATAATACTGGATGCCAGTTGTGGAGTAAAGGAGCAAAGTTTATTAAGGATTCTGGAGGAAATTTGAAACGAGTTTACTTTGTCAAAGATAAAGCGAACAAGCTGTGGGAATGGATTATCATTGGTGTTGGAGCAGTTGTTGCAGCACTTGCGTCCTGCTACTTATTCTATGCCTTGGGGAGAAAGTGCAAAGAAGAAGTGGATAGAAAAATGAAGCAAAAGGAGCTGTTAGTTGAGGTTGGAGGTAATGCAATGGGAAATTATGGCAAAGCCAAAGGGTCTCAGAAAGAGGGAAAGACAATCAATGAGATTGAAGTATTCAGTTTGGAAAACATCATTGTTGCCACACACAATTTCTCTCCTGATAATAAGCTAGGAGAGGGTGGTTTTGGTCCTGTCTATAAGGGAACACTAATTGATGGACAAGAAATTGCGATAAAAAGACTTTCTAGAAGTTCAGGCCAAGGCCTAGTAGAGTTCAAGAATGAAGCTAAGATTATGGCCAAACTTCAGCACACTAATCTTGTGAGACTTTTGGGGTTCTGCATTGACAGTGATGAAAGAATGCTTGTATATGAATACATGTCCAACAAGAGCTTAGACCATTATTTATTCGATGCAAGTAGAAAGAATGAGCTAGATTGGAAAAAACATCTTAAGATCATTGAAGGCACTGCTCAAGGACTTGTTTATTTGCACAGATATTCAAGACTAAAGGTGATACATCGGGACTTGAAGGCAAGCAATATACTGCTTGATGAAGAAATGAATCCAAGAATCTCTGACTTTGGCTTGGCTAGAATATTTGGACTGAAAGGATCTGAAGAAAACACAAATAGAGTTGTTGGAACATATGGTTACATGTCTCCAGAATATGCAATCAATGGTGTTGTCTCAGTCAAAACCGATGTATACAGCTTTGGTGTTCTGCTACTTGAAATTATTAGTGGGATGAAGAACAATAGTTGCATCCACTCAAATCAGCCATTCAATCTCATAGCACATGCCTGGCAGCTATGGAATCAAGGGAGAGCTCTAGAGCTGATGGATCCATCATTATATGAATCATACAATTGTGATGAAGTAGAAAGATGCATTCAGATTGGACTCTTGTGCGTGCAAGATCATGCAGTGGAAAGACCTACCATAGAAGAAGTTGTTACTTTCCTATCAAATGATACCATCCAACTTGGTCAACCAAAGCAGCCAGCATTCTTCATGTATGTGGTTGCGGGAGACTCGGGGTGTCCTAATAGTAGCAAACAAGAAAGTTATTCACTAAATCATTTATCAATCTCCACTACTTATGGGAGATAA	2397	0.4001	MTMFRFSSFLLLLLFLVLILPHTTHSDDIAIYWGSNDGKGKLIETCATGLYSYVNIAFLAHFGNGQTPQLILGRHCDPAGGNCSLLSREIRNCQKQGIKVMLSIGGPSMSYSLASSEDAKNVSDYLWHNFLGGGGNSSSSPLGDAILDGIDFGLGGSLMTKHWEDLAHYLKSHRRNVYLSAAPQCLFPDSALGKALETGLFDYVWIQFYNNPLCQYSEGNVYSLFNAWKQWTTSLKAGKIFLGLPASPTASVGGYIPPDLLISQILSTVKMYSNYGGIMLWSRFYDKESGYSKKNLENSLCLQKRESECGRHKNVFVERLGYMATDGFVVSENKSIGRQCCEVICRNNCSCEAYAPLNFVNNTGCQLWSKGAKFIKDSGGNLKRVYFVKDKANKLWEWIIIGVGAVVAALASCYLFYALGRKCKEEVDRKMKQKELLVEVGGNAMGNYGKAKGSQKEGKTINEIEVFSLENIIVATHNFSPDNKLGEGGFGPVYKGTLIDGQEIAIKRLSRSSGQGLVEFKNEAKIMAKLQHTNLVRLLGFCIDSDERMLVYEYMSNKSLDHYLFDASRKNELDWKKHLKIIEGTAQGLVYLHRYSRLKVIHRDLKASNILLDEEMNPRISDFGLARIFGLKGSEENTNRVVGTYGYMSPEYAINGVVSVKTDVYSFGVLLLEIISGMKNNSCIHSNQPFNLIAHAWQLWNQGRALELMDPSLYESYNCDEVERCIQIGLLCVQDHAVERPTIEEVVTFLSNDTIQLGQPKQPAFFMYVVAGDSGCPNSSKQESYSLNHLSISTTYGR	798

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo1g01774	798	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	555	760	-	-
	Pumo1g01774	798	Gene3D	Glycosidases	27	298	-	-
	Pumo1g01774	798	Gene3D	Transferase(Phosphotransferase) domain 1	555	761	-	-
	Pumo1g01774	798	SMART	serkin_6	479	750	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo1g01774	798	SUPERFAMILY	(Trans)glycosidases	24	294	IPR017853	-
	Pumo1g01774	798	Pfam	PAN-like domain	312	370	IPR003609	-
	Pumo1g01774	798	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	600	612	IPR008271	GO:0004672\|GO:0006468
	Pumo1g01774	798	ProSiteProfiles	PAN/Apple domain profile.	309	391	IPR003609	-
	Pumo1g01774	798	Pfam	Protein tyrosine and serine/threonine kinase	482	748	IPR001245	GO:0004672\|GO:0006468
	Pumo1g01774	798	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	444	554	-	-
	Pumo1g01774	798	FunFam	Acidic endochitinase SE2	27	299	-	-
	Pumo1g01774	798	CDD	GH18_hevamine_XipI_class_III	28	294	IPR045321	-
	Pumo1g01774	798	Gene3D	Phosphorylase Kinase; domain 1	453	554	-	-
	Pumo1g01774	798	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	322	795	-	-
	Pumo1g01774	798	CDD	STKc_IRAK	485	750	-	-
	Pumo1g01774	798	Pfam	Glycosyl hydrolases family 18	29	286	IPR001223	GO:0005975
	Pumo1g01774	798	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	27	304	IPR001223	GO:0005975
	Pumo1g01774	798	ProSiteProfiles	Protein kinase domain profile.	479	755	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo1g01774	798	SUPERFAMILY	Protein kinase-like (PK-like)	462	770	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo1g01774	Pumo-Chr1	30099968	30192025	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo1g01774	472	765	Receptor kinase-like Gene Family	AT4G23230	59.184	8.62e-122	378

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pumo1g01774		PK_Tyr_Ser-Thr	1.3e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo1g01774	-		-	gmx:100809337	1459.89